View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11402_high_29 (Length: 286)

Name: NF11402_high_29
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11402_high_29
NF11402_high_29
[»] chr2 (2 HSPs)
chr2 (183-277)||(3068456-3068550)
chr2 (29-101)||(21004552-21004624)
[»] chr8 (2 HSPs)
chr8 (2-184)||(39688340-39688521)
chr8 (29-85)||(45519398-45519454)
[»] chr4 (4 HSPs)
chr4 (2-184)||(22813166-22813347)
chr4 (141-191)||(40872946-40872995)
chr4 (123-179)||(6047066-6047121)
chr4 (123-179)||(52035150-52035205)
[»] chr6 (1 HSPs)
chr6 (2-106)||(21844238-21844342)
[»] chr5 (1 HSPs)
chr5 (29-85)||(9071888-9071944)
[»] chr3 (1 HSPs)
chr3 (43-101)||(37023728-37023786)
[»] chr1 (2 HSPs)
chr1 (29-83)||(22778544-22778598)
chr1 (23-101)||(31376609-31376687)
[»] chr7 (3 HSPs)
chr7 (29-85)||(40320507-40320563)
chr7 (54-101)||(17352969-17353016)
chr7 (123-191)||(42338150-42338217)
[»] scaffold0050 (1 HSPs)
scaffold0050 (43-85)||(80929-80971)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 3068550 - 3068456
Alignment:
Q  183 tatattttataaacaacatcttaaatagcctttgtaatttgaacgaaacctgaaaatagtcccgtcaaaaatctaaacacagatttagccctttg 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  3068550 tatattttataaacaacatcttaaatagcctttgtaatttgaacgaaacctgaaaatagtcccgtgaaaaatgtaaacacagatttagccctttg 3068456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 21004552 - 21004624
Alignment:
Q  29 tacacaggtggcgagacacatatgattgaccaagtcaaaattggagtattgcaaaagagattaaacatgaggg 101  Q
    ||||||| ||| | ||||||||  |||||||||||||||||| | || |||||||||||  ||||||||||||    
T  21004552 tacacagatggtgtgacacatagtattgaccaagtcaaaattagtgttttgcaaaagaggctaaacatgaggg 21004624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 39688521 - 39688340
Alignment:
Q  2 attactctcctattgaattaaaagaattacacaggtggcgagacacatatgattgaccaagtcaaaattggagtattgcaaaagagattaaacatgaggg 101  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||||||| ||    
T  39688521 attactctcctttttaattaaaataattacacaggtggcgagacacataggattgaccaagtcaagattggagtattgcaaaaggggttaaacatgacgg 39688422  T
Q  102 atgtcatatgccannnnnnnnaataggaggccaacactgcaacttttgcaaatttaggggggttaaaagtgggtttaaaccta 184  Q
     |||| |  ||||        |||||| | |||| | ||||||||||||||| |||  ||||| |||||||||||||| ||||    
T  39688421 gtgtctttggccattttttttaataggggaccaaaattgcaacttttgcaaactta-aggggtcaaaagtgggtttaagccta 39688340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 45519398 - 45519454
Alignment:
Q  29 tacacaggtggcgagacacatatgattgaccaagtcaaaattggagtattgcaaaag 85  Q
    ||||||| ||||| |||| |||||||||||||||| |||||||| || |||||||||    
T  45519398 tacacagctggcgtgacatatatgattgaccaagttaaaattggtgttttgcaaaag 45519454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 22813166 - 22813347
Alignment:
Q  2 attactctcctattgaattaaaagaattacacaggtggcgagacacatatgattgaccaagtcaaaattggagtattgcaaaagagattaaacatgaggg 101  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| | |||||||||||||    
T  22813166 attactctcctttttaattaaaataattacacaggtggcgagacacataggattgaccaagtcaagattggagtattacaaaaggggttaaacatgaggg 22813265  T
Q  102 atgtcatatgccannnnnnnnaataggaggccaacactgcaacttttgcaaatttaggggggttaaaagtgggtttaaaccta 184  Q
     |||| | |||||        |||||| | |||| | ||||||||||||||| |||  | ||| |||||||||||||| ||||    
T  22813266 gtgtcttttgccattttttttaataggggaccaaaattgcaacttttgcaaactta-agaggtcaaaagtgggtttaagccta 22813347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 40872995 - 40872946
Alignment:
Q  141 caacttttgcaaatttaggggggttaaaagtgggtttaaacctatatttta 191  Q
    ||||||||||||| |||||||| | |||||||||||||| |||||||||||    
T  40872995 caacttttgcaaacttaggggg-tgaaaagtgggtttaagcctatatttta 40872946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 6047121 - 6047066
Alignment:
Q  123 aataggaggccaacactgcaacttttgcaaatttaggggggttaaaagtgggtttaa 179  Q
    |||||| |||||| | ||||||||||||||| ||| |||||| ||||||||||||||    
T  6047121 aatagggggccaaaattgcaacttttgcaaactta-gggggtaaaaagtgggtttaa 6047066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 52035150 - 52035205
Alignment:
Q  123 aataggaggccaacactgcaacttttgcaaatttaggggggttaaaagtgggtttaa 179  Q
    |||||| |||||| | |||||||||||||||||||  ||||| ||||||||||||||    
T  52035150 aatagggggccaaaattgcaacttttgcaaattta-aggggtaaaaagtgggtttaa 52035205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 21844238 - 21844342
Alignment:
Q  2 attactctcctattgaattaaaagaattacacaggtggcgagacacatatgattgaccaagtcaaaattggagtattgcaaaagagattaaacatgaggg 101  Q
    ||||||||||| || |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||  | |||||||||||| |||||||| |||    
T  21844238 attactctccttttcaattaaaaaaattacacagctggcgagacacataggattgaccaagtcaaaattgggattttgcaaaagagactaaacatggggg 21844337  T
Q  102 atgtc 106  Q
     ||||    
T  21844338 gtgtc 21844342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 9071888 - 9071944
Alignment:
Q  29 tacacaggtggcgagacacatatgattgaccaagtcaaaattggagtattgcaaaag 85  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| || |||||||||    
T  9071888 tacacagctggcgtgacacatatgattgaccaagtcaaaattggtgttttgcaaaag 9071944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 37023728 - 37023786
Alignment:
Q  43 gacacatatgattgaccaagtcaaaattggagtattgcaaaagagattaaacatgaggg 101  Q
    |||||||| | ||||||||||||||||||| || ||||||||| | |||||||||||||    
T  37023728 gacacataggtttgaccaagtcaaaattggtgttttgcaaaaggggttaaacatgaggg 37023786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 22778544 - 22778598
Alignment:
Q  29 tacacaggtggcgagacacatatgattgaccaagtcaaaattggagtattgcaaa 83  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||| || |||||||    
T  22778544 tacacagctggcgtgacacataggattgaccaagtcaaaattggtgttttgcaaa 22778598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 31376687 - 31376609
Alignment:
Q  23 aagaattacacaggtggcgagacacatatgattgaccaagtcaaaattggagtattgcaaaagagattaaacatgaggg 101  Q
    ||||| ||||||||||||  |||||||||| |||||  |||||||||||  || ||||||||| |  ||||||||||||    
T  31376687 aagaaatacacaggtggcatgacacatatggttgactgagtcaaaattgaggttttgcaaaagggggtaaacatgaggg 31376609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 40320563 - 40320507
Alignment:
Q  29 tacacaggtggcgagacacatatgattgaccaagtcaaaattggagtattgcaaaag 85  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||  || |||||||||    
T  40320563 tacacagctggcgtgacacatatgattaaccaagtcaaaattgatgttttgcaaaag 40320507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 17353016 - 17352969
Alignment:
Q  54 ttgaccaagtcaaaattggagtattgcaaaagagattaaacatgaggg 101  Q
    |||||||||||||||||||||| ||||||||| |  ||||||||||||    
T  17353016 ttgaccaagtcaaaattggagttttgcaaaagggggtaaacatgaggg 17352969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 42338150 - 42338217
Alignment:
Q  123 aataggaggccaacactgcaacttttgcaaatttaggggggttaaaagtgggtttaaacctatatttta 191  Q
    ||||||||||||| | ||||||||||||||| ||| |||||  ||||||| |||||| || ||||||||    
T  42338150 aataggaggccaaaattgcaacttttgcaaactta-gggggcaaaaagtgagtttaagccaatatttta 42338217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 80929 - 80971
Alignment:
Q  43 gacacatatgattgaccaagtcaaaattggagtattgcaaaag 85  Q
    |||||||| ||||||||||||||||||||| || |||||||||    
T  80929 gacacataggattgaccaagtcaaaattggtgttttgcaaaag 80971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University