View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11402_high_32 (Length: 269)

Name: NF11402_high_32
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11402_high_32
NF11402_high_32
[»] chr4 (1 HSPs)
chr4 (31-131)||(10634239-10634339)
[»] chr5 (1 HSPs)
chr5 (195-258)||(17205597-17205660)
[»] chr1 (5 HSPs)
chr1 (29-228)||(29718792-29718994)
chr1 (29-136)||(29658765-29658872)
chr1 (29-136)||(29691280-29691387)
chr1 (29-136)||(33160696-33160803)
chr1 (61-131)||(30827304-30827374)
[»] chr6 (1 HSPs)
chr6 (31-125)||(6594411-6594505)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 10634239 - 10634339
Alignment:
Q  31 aagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagctatt 130  Q
    |||||||||||||||||| ||||| |||||||| |||||||| ||||| || |||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  10634239 aagtctctttgtttggctcactgtgagctgttgggagatgaacacatcatgttgtttacttccatttttcccaacttggacgtgctggatttgagttatt 10634338  T
Q  131 g 131  Q
    |    
T  10634339 g 10634339  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 17205660 - 17205597
Alignment:
Q  195 cttgtcatacacagatgttgatgataaatcactctgtctcatctcaaagtgttttcctatgctt 258  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  17205660 cttgtcatacacagatgttgatgataaatcactctgtatcatctaaaagtgttttcctatgctt 17205597  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 228
Target Start/End: Original strand, 29718792 - 29718994
Alignment:
Q  29 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 128  Q
    ||||||||||||||||||||  |||| |    ||||||||| |||||||  |  ||||| |||||||||||||||||||||||||||| |||||||||||    
T  29718792 taaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagcta 29718891  T
Q  129 ttggaagggcatgtgtgaggaaattgttggtctagtattaaga---tgtcataatcttaagcatatgaacttgtcatacacagatgttgatgataaatca 225  Q
    ||||||||   ||| ||| |||| ||||  |  ||| ||||||   |||  |||  |||||||| ||||||||||||| ||  | |||||||||||||||    
T  29718892 ttggaaggaagtgtctgaagaaactgtttctaaagttttaagatgttgtactaagattaagcatttgaacttgtcatataccaacgttgatgataaatca 29718991  T
Q  226 ctc 228  Q
    |||    
T  29718992 ctc 29718994  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 29658765 - 29658872
Alignment:
Q  29 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 128  Q
    ||||||||||||||||||||  |||| |    ||||||||| |||||||| |  ||||| |||||||||||||||||||||| ||||| |||||||||||    
T  29658765 taaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttgagcta 29658864  T
Q  129 ttggaagg 136  Q
    ||||||||    
T  29658865 ttggaagg 29658872  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 29691280 - 29691387
Alignment:
Q  29 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 128  Q
    ||||||||||||||||||||  |||| |    ||||||||| |||||||  |  ||||| |||||||||||||||||||||||||||| |||||||||||    
T  29691280 taaagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagcta 29691379  T
Q  129 ttggaagg 136  Q
    ||||||||    
T  29691380 ttggaagg 29691387  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 33160803 - 33160696
Alignment:
Q  29 taaagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagcta 128  Q
    |||||||||||| ||||||  ||||| |||  |||||||||||||||||| |  ||||| ||| ||| |||||||| ||||||||||| |||||||||||    
T  33160803 taaagtctctttctttggcggactgtcagcacttgagagatgaaaacatcgtattgtttcctttcatgttccccaatttggaggtgcttgatttgagcta 33160704  T
Q  129 ttggaagg 136  Q
    || |||||    
T  33160703 ttcgaagg 33160696  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 30827374 - 30827304
Alignment:
Q  61 ttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgagctattg 131  Q
    |||||||||||||||||| |  |||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  30827374 ttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 30827304  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 6594411 - 6594505
Alignment:
Q  31 aagtctctttgtttggctaactgtaagctgttgagagatgaaaacatcttgctgtttacttccattttccccaacttggaggtgctggatttgag 125  Q
    ||||||||||||||||||  |||| |||  |||| ||||||||||||| |  ||||| |||| ||||||||||  |||||| |||| ||||||||    
T  6594411 aagtctctttgtttggctcgctgtgagcacttgaaagatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgag 6594505  T

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