View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_high_37 (Length: 250)
Name: NF11402_high_37
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 53336679 - 53336755
Alignment:
| Q |
1 |
cctcaaacatcatcttaatttagaaattggatgtctcggcaatttaccgcattcacaaagtcggaacatctttacta |
77 |
Q |
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| T |
53336679 |
cctcaaacatcatcttaatttagaaattggatgtcttggcaatttaccgcattcacaaagtcggaacatctttacta |
53336755 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 53336832 - 53336905
Alignment:
| Q |
161 |
tccaagaattattaaatgttttgaatgtttgtatgcgacaaattgcgaagaa-cccggttcaattgaggtgtgc |
233 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
53336832 |
tccaaggattattaaatgttttgaatgtttgtatgcgacatattgcgaagaatcctggttcaattgaggtgtgc |
53336905 |
T |
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