View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_high_41 (Length: 240)
Name: NF11402_high_41
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 12774204 - 12774429
Alignment:
| Q |
1 |
cagctgcatctttctttacaatctcacaagaggatcagaatcagatgaatcaacagaattcatcaacaccttcatcatcaacaactccaactgcaccacc |
100 |
Q |
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| T |
12774204 |
cagctgcatctttctttacaatctcacaagaggatcagaatcagatgaatcaacagaattcatcaacaccttcatcatcaacaactccaactgcaccacc |
12774303 |
T |
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| Q |
101 |
tcagaagaaaaggagaaaccaacctggaacaccaagcaagtttcttcaaataatttatcagaaatatttaatttataaatac--nnnnnnnnnnggtttc |
198 |
Q |
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| T |
12774304 |
tcagaagaaaaggagaaaccaacctggaacaccaagcaagtttcttcatataatttatcagaaatatttaatttataaatacttttttttttttggtttc |
12774403 |
T |
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| Q |
199 |
atgtcttacaaataatattttgtttt |
224 |
Q |
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|||||||||||||||||||||||||| |
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| T |
12774404 |
atgtcttacaaataatattttgtttt |
12774429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 50789754 - 50789699
Alignment:
| Q |
91 |
ctgcaccacctcagaagaaaaggagaaaccaacctggaacaccaagcaagtttctt |
146 |
Q |
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|||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50789754 |
ctgcaccagctccgaagaaaaagagaaaccaacctggaacaccaagcaagtttctt |
50789699 |
T |
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