View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_high_43 (Length: 236)
Name: NF11402_high_43
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 14128003 - 14128223
Alignment:
| Q |
1 |
ccttcttctctccaccaaagaaattctatctttgctttattttcttcttttatatttctaagaattctgaacttttcttgaaatcctcatacactctgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14128003 |
ccttcttctctccaccaaagaaattctatctttgctttattttcttcttttatatttctaagaattctgaacttttcttgaaatcctcatacactctgag |
14128102 |
T |
|
| Q |
101 |
aacactgtcggttcagtatcatctagtgtccacttgagc-ttgcttagcaaataataaatattcttcatcttggtatttgtgttgtacttgttttctttt |
199 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14128103 |
aacactgtcggttcaccatcatctagtgtccacttgagctttgcttagcaaataataaatattcttcatcttggtatttgtgttgtacttattttctttt |
14128202 |
T |
|
| Q |
200 |
actatctgttaggtgcacttg |
220 |
Q |
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||||||||||||||||||||| |
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| T |
14128203 |
actatctgttaggtgcacttg |
14128223 |
T |
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