View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11402_high_5 (Length: 606)
Name: NF11402_high_5
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 10 - 590
Target Start/End: Complemental strand, 30481483 - 30480897
Alignment:
| Q |
10 |
gcacagacattgcaggttttgatcctttttgctaacaaattctccctcccctgacaaactgattggctnnnnnnntgcacagataatgaaaaagatgtac |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30481483 |
gcacagacgttgcaggttttgatcctttttgctaacaaattctccctcccctgacaaactgattggctaaaaaaatgcacagataatgaaaaagatgtac |
30481384 |
T |
|
| Q |
110 |
aggtaagtagaggaaaccactcatcagccaaaaaagacatcaacataaaaccaaatgagtagcagacattgggtggtgaaatatatcctacttgacaatg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30481383 |
aggtaagtagaggaaaccactcatcagccaaaacagacatcaacataaaaccaaatgagtagcagacattgggtggtgaaatataacctacttgacaatg |
30481284 |
T |
|
| Q |
210 |
tcatgctttaggctcatacggtttcttcttcggttgatccattacagaataaaccatcagtatagtacataaatcatcacactctccaatttaaccctat |
309 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30481283 |
tcatgttttaggctcatacggtttcttcttcggtcgatccattacagaataaaccatcaatatagtacataaatcatcacactctccaatttaaccctat |
30481184 |
T |
|
| Q |
310 |
aatgcataaaaataattagtcctcaaaatatatgaaattcatcattttagtctcggctattaaaatgccaagtactaacatgtttgattttgaaatattt |
409 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30481183 |
aatgcataaaaacaattagtcctcaaaatatatgaaattcgtcattttagtctcggctattaaaatgccaagtactaacatgtttgattttcaaatattt |
30481084 |
T |
|
| Q |
410 |
taagaactaaaatgaaggattttttatgctttagggaccaaattaaacttcaaccatttcaccaagcacaaaaccgactaaa------taaaagaaattg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30481083 |
taagaactaaaatgaaggattttttatgctttagggaccaaattaaacttcaaccatttcaccaagcacaaaaccgactaaaaaaatgtaaaagaaattg |
30480984 |
T |
|
| Q |
504 |
cagagtaaaagcaattactagtactcacccactaacatctgcaatttctctagagatcttcatcttctttgtagttcctctatatat |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30480983 |
cagagtaaaagcaattactagtactcacccactaacatctgcaatttctctagagatcttcatcttctttgtagttcctctatatat |
30480897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 418 - 590
Target Start/End: Original strand, 5306836 - 5307014
Alignment:
| Q |
418 |
aaaatgaaggattttttatgctttagggaccaaattaaacttcaaccatttcaccaagcacaaaaccgactaaataaaag-------aaattgcagagta |
510 |
Q |
| |
|
||||||||| |||| ||| ||||||| |||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||| ||| |||| |
|
|
| T |
5306836 |
aaaatgaagaatttcatatactttagg-accaaattaaacttcaaccaattcattaagcacaaaaccgactaaagaaaagggagaagaaatagcacagta |
5306934 |
T |
|
| Q |
511 |
aaagcaattactagtactcacccactaacatctgcaatttctctagagatcttcatcttctttgtagttcctctatatat |
590 |
Q |
| |
|
|||| || ||||||||||||| ||||| || | |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5306935 |
aaagtaactactagtactcactcactagaatatacaatttctctagagatcttcatcttcattgtagttcctctatatat |
5307014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University