View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_low_1 (Length: 763)
Name: NF11402_low_1
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Complemental strand, 21060313 - 21059827
Alignment:
| Q |
19 |
ctaccctcgtagttgattttgcttaattttgtgttttcatggtttaagttgtgtttttgtatcatggggtggtgatttgaggtttgatccaaggagcttc |
118 |
Q |
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| T |
21060313 |
ctaccctcgtagttgattttgcttaattttgtgttttcatggttttagttgtgtttttgtatcatggggtggtgatttgaggtttgatccaaggagcttc |
21060214 |
T |
|
| Q |
119 |
ttgtatgtttttcttttttcttgtacaattgtgaaagatggtgttgannnnnnnnnnnnnaattaattgtgaaagttgttattgtttgtgtaattgtgat |
218 |
Q |
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| T |
21060213 |
ttgtatgtttttcttttttcttgtacaattgtgaaagatggtgttgatttttttttt---aattaattgtgaaagttgttattgtttgtataattgtgat |
21060117 |
T |
|
| Q |
219 |
agtttatgttaatctttgtgtaaaatttaaagttgatgataatttttgtgacagttgatgttggtttttgtgtaattggtgaaatttgatgttagttttt |
318 |
Q |
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| T |
21060116 |
agtttatgttaatctttgtgtaaaatttaaagttgatgataatttttgtgaaagttgatgatggtttttgtgtaattggtgaaatttgatgttagttttt |
21060017 |
T |
|
| Q |
319 |
gtgaaagttgacgataattttt-tataattgtgaaagttaatgttaatttttgtgtaattgtgaaaggatggttagaatttaagggaatcagaggtgaaa |
417 |
Q |
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| T |
21060016 |
gtgaaagttgacgataatttttgtataattttgaaagttaatgttaatttttgtgtaattgtgaaaggatggttagaatttaagggaatcagaggtgaaa |
21059917 |
T |
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| Q |
418 |
gaaacataatttgggatttagtctatgaaaatgagaaagaaaattgtttggattttaattatttttattatggttgattttcctgtttaa |
507 |
Q |
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| T |
21059916 |
gaaacagaatttgggatttagtctatgaaaatgagaaagaaaattgtttggattttaattatttttattatggttgattttcctgtttaa |
21059827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 484 - 661
Target Start/End: Complemental strand, 21059815 - 21059638
Alignment:
| Q |
484 |
attatggttgattttcctgtttaaagtcttctaaaactaaattttatttctttgcagagaataccattataccacaaggttctttgaagttgggtttgtc |
583 |
Q |
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| T |
21059815 |
attatgattgattttcatgtttaaagtcttataaaactaaattttatttctttgcagagaataccattataccacaaggttctttgaagttgggtttgtc |
21059716 |
T |
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| Q |
584 |
agtatgaagccaactttgggtcaagctcaaagtaattgggaagctgacaaaatgtatgttacttattaaatgcttgac |
661 |
Q |
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| T |
21059715 |
agtatgaagccaactttgggtcaagctcaaagtaattgggaagctgacaaaatgtatgttacttattaaatgcttgac |
21059638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 181 - 421
Target Start/End: Complemental strand, 21046380 - 21046139
Alignment:
| Q |
181 |
ttaattgtgaaagttgtt---attgtttgtgtaattgtgatagtttatgttaatctttgtgtaaaatttaaagttgatgataatttttgtgacagttgat |
277 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||| || ||||| | | ||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
21046380 |
ttaattgtgaaagttgatgctattgtttgtgtaattgtgatagttgatattaatttgtatgtaaaattgaaagttgatgataatttttgtgaaagttgat |
21046281 |
T |
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| Q |
278 |
gttggtttttgtgtaattggtgaaatttgatgttagtttttgtgaaagttgacgataatttt-ttataattgtgaaagttaatgttaatttttgtgtaat |
376 |
Q |
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| T |
21046280 |
gatgatttttgtgttat---tgaaatttgatgttagtttctgtgaaagctgacgataattttcgtgtatctgcgaaaattgatgttaatttttgtgtaat |
21046184 |
T |
|
| Q |
377 |
tgtgaaaggatggttagaatttaagggaatcagaggtgaaagaaa |
421 |
Q |
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| T |
21046183 |
tgtgaaatgattgttagatttcaagggaatctgaagtgaaagaaa |
21046139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 456 - 659
Target Start/End: Complemental strand, 21045786 - 21045591
Alignment:
| Q |
456 |
gaaaattgtttggattttaattatttttattatggttgattttcctgtttaaagtcttctaaaactaaattttatttctttgcagagaataccattatac |
555 |
Q |
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||||||||| |||| |||||||| |||||||||||||||||||| ||||||||| ||||||| | || ||||| ||| ||||||| ||||| || |
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| T |
21045786 |
gaaaattgtatggagtttaattacttttattatggttgattttcgtgtttaaaggcttctaaga-tatattttctttatttgcagggaata------tag |
21045694 |
T |
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| Q |
556 |
cacaaggttctttgaagttgggtttgtcagtatgaagccaactttgggtcaagctcaaagtaattgggaagctgacaaaatgtatgttacttattaaatg |
655 |
Q |
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| T |
21045693 |
cacaggtttctttgaagttgg-tttgtcaatatgaagccaactttgggtcaagctcaaagtaactgggaagctgataaagtgtatgttacttgctaaatg |
21045595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 21046472 - 21046388
Alignment:
| Q |
19 |
ctaccctcgtagttgattttgcttaattttgtgttttcatggtttaagttgtgtttttgtatcatggggtggtgatttgaggttt |
103 |
Q |
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| T |
21046472 |
ctaccgtcatagttgattttgcttaattttgtgttttcatggttttagttgtgtttttgtatcatgggatggtgatttaaggttt |
21046388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 359 - 437
Target Start/End: Complemental strand, 21045980 - 21045902
Alignment:
| Q |
359 |
tgttaatttttgtgtaattgtgaaaggatggttagaatttaagggaatcagaggtgaaagaaacataatttgggattta |
437 |
Q |
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| T |
21045980 |
tgttaacttttgtgcaatggtgaaatgattattagaattgaagggtttcagaagttaaagaaacaaaatttgggattta |
21045902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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