View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_low_10 (Length: 538)
Name: NF11402_low_10
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 31415139 - 31415480
Alignment:
| Q |
16 |
aggggcatggttgacctacttaacaaattagccaagaatagaagccaagtagccacggtggttggcgttgaaaaggcctcacaaccaaatgattttgagc |
115 |
Q |
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| T |
31415139 |
aggggcatggttgacctacttaacaaattagccaagaatagaagccaagtagccacggtggttggcgttgaaaaggcctcacaagcaaatgattttgagc |
31415238 |
T |
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| Q |
116 |
agtgggtgaatgagttgaatgattgcactctaatctagagctcatagtgtagttgcatttattttatttttccttctaatttgtgcagtttcctaatann |
215 |
Q |
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| T |
31415239 |
agtgggtgaatgagttgaatgattgcactctaatctagagctcatagtgtagttgcatttattttattttttcttctaatttgtgcagtttcctaatatt |
31415338 |
T |
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| Q |
216 |
nnnnncatcacccttttgatattaatcaaggcgtgatgttaagcaaaacaaaaacaatatgcttttgttatttttccaaaaa-ttctttggatttgatgt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
31415339 |
tttttcatcacccttttgatattaatcaaggcgtgatgttaagcaaaacaaaaacaatatgcttttgttatttttccaaaaatttctttggatttgat-t |
31415437 |
T |
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| Q |
315 |
taagttgaagaaaaggatatttaatatgcagaatttcctttcc |
357 |
Q |
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| T |
31415438 |
taagttgaagaaaaggatatttaatatgcagaatttcctttcc |
31415480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 381 - 507
Target Start/End: Original strand, 31415546 - 31415671
Alignment:
| Q |
381 |
aatcctttttatccttagttcaagcaagttaagttatccaatccctcaattttgtttgaaagattgnnnnnnngttacaccaattgagtgaaaaagttgc |
480 |
Q |
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| T |
31415546 |
aatcctttctatccttagtacaagcaagttaagttatccaatccctcaattttgtttgaaagattg-ttttttgttacaccaattgagtgaaaaagttgc |
31415644 |
T |
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| Q |
481 |
aatagtggaaatcaattatcctccttt |
507 |
Q |
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| T |
31415645 |
aatagtggaaatcaattctcctccttt |
31415671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 31407999 - 31408117
Alignment:
| Q |
20 |
gcatggttgacctacttaacaaattagccaagaatagaagccaagtagccacggtggttggcgttgaaaaggcctcacaaccaaatgattttgagcagtg |
119 |
Q |
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| T |
31407999 |
gcatggttgacctacttaacaaattagccaagaatagaagccaagt---catggtggtagaaaatgaaatggcctcactagaaaatgatgttgagcaatg |
31408095 |
T |
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| Q |
120 |
ggtgaatgagttgaatgattgc |
141 |
Q |
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| T |
31408096 |
ggtgaatgagttgagtgattgc |
31408117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 31411172 - 31411305
Alignment:
| Q |
16 |
aggggcatggttgacctacttaacaaattagccaagaatagaagccaagtagccacggtggttggcgttgaaaagg---cctcacaaccaaatgattttg |
112 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||| |||| ||| | |||||||| |||||| || | ||||| | |||||||||| |
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| T |
31411172 |
aggggcacggttgacctacttaacaaactagccaagaatagatgcca---agctaaggtggttgaaattgaaacggcatcatcacatgctaatgattttg |
31411268 |
T |
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| Q |
113 |
agcagtgggtgaatgagttgaatgattgcactctaat |
149 |
Q |
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| T |
31411269 |
agcaatgggtgaatgagttgagtgatagctctctaat |
31411305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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