View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11402_low_11 (Length: 532)
Name: NF11402_low_11
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Complemental strand, 52482646 - 52482134
Alignment:
| Q |
18 |
ctaaacaccaaaccgtaccaaagtctattagagccagtagttaaactaaatttcttgcatataggtctaattatctttgtg--------atatatatata |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52482646 |
ctaaacaccaaaccgtaccaaagtctattagagccagtagttaaattaaatttcttgcatataggtctaattatctttgtgttatatatatatatatata |
52482547 |
T |
|
| Q |
110 |
cagaaaattccacatcaatggaagacaagcgggcaacaa-ctatgcctctaaacgtttttagatagtaaaaccaatcctcgtaaaattactcataagtcc |
208 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||| |||| ||| ||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |
|
|
| T |
52482546 |
cagaaaatttcacgttaatggaagacaagcgggctacaaactacgccgctaaacgtttttagatagcaaaactaatcctcgtaaaattacacataagtcc |
52482447 |
T |
|
| Q |
209 |
aattctaaattctaactgccttaaaagtagtttcggtaagttttccttcacttagctgatttccattgcctaattaaatgtgaaacaccctccttcaccg |
308 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52482446 |
aattctaaattctaaccgccttaaaagtagtttcggtaagttttccttcgcttagctgatttccattgcctaattaaatgtgaaacaccctccttcaccg |
52482347 |
T |
|
| Q |
309 |
tagccttccttccttccttaaaattccagagttcaagtattgagtatcttccactaggattgtactcatttaactcctttagagctgtaactactgcatc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52482346 |
tagccttccttccttccttaaaattccagagttcaagtattgagtatcttccactaggattgtactcatttaactcctttagagctgtaactactgcatc |
52482247 |
T |
|
| Q |
409 |
atgcaccttatccccgaattcatcctttaaacttttcagtttttcatcttctccgtctaaaatttcctgtgccatatattaacatatattagatcatggt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52482246 |
atgcaccttatccccgaattcatcctttaaacttttcagtttttcatcttctccgtctaaaatttcctgtgccatatattaacatatattagatcatggt |
52482147 |
T |
|
| Q |
509 |
acatgctgttcat |
521 |
Q |
| |
|
||||||||||||| |
|
|
| T |
52482146 |
acatgctgttcat |
52482134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 279 - 505
Target Start/End: Original strand, 16407261 - 16407488
Alignment:
| Q |
279 |
taattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaagtattgagtatcttccactaggattgtactcatt |
378 |
Q |
| |
|
|||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||| | || |||||||||||||||||||| |
|
|
| T |
16407261 |
taattaaatgcgaaacaccttccttcaacgaagccttccttccttccttaaaattccagagttccggtattggattcctgccactaggattgtactcatt |
16407360 |
T |
|
| Q |
379 |
taactcctttagagctgtaactactgcatcatgcaccttatccccgaattcatcctttaaacttttcagtttttcatcttctccgtctaaaatttcctgt |
478 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||| ||| |||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16407361 |
taactccttcagagccgtagatactgcatcatgcgcctcatccccaacctcatccttcaaacttttcagcttttcatcttctccgtctaaaatttcctgc |
16407460 |
T |
|
| Q |
479 |
gccatatat-taacatatattagatcat |
505 |
Q |
| |
|
| |||||| |||||||||||||||||| |
|
|
| T |
16407461 |
gtgatatatctaacatatattagatcat |
16407488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 245 - 521
Target Start/End: Complemental strand, 41472172 - 41471895
Alignment:
| Q |
245 |
taagttttccttcacttagctgatttccattgcctaattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaa |
344 |
Q |
| |
|
||||||||| ||| |||| | || ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
41472172 |
taagttttctttcccttatttaatatccattgcctaattaaatgggaaacaccctccttcaacgtggccttccttccttccctaaaattccagagttccg |
41472073 |
T |
|
| Q |
345 |
gtattgagtatcttccactaggattgtactcatttaactcctttagagctgtaactactgcatcatgcaccttatccccgaattcatcctttaaactttt |
444 |
Q |
| |
|
|||||| ||| || |||||||| ||| |||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
41472072 |
gtattgggtacctaccactagggttgcactcgtttaactccttcagagctgtagctactgcatcatgcacctcatccccgaactcatccttcaaactttt |
41471973 |
T |
|
| Q |
445 |
cagtttttcatcttctccgtctaaaatttcctgtgccatatat-taacatatattagatcatggtacatgctgttcat |
521 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
41471972 |
tagcttttcatcttctccgtctaaaatttcctgcgtggtatatgtaacatatattagatcatggcccatgcagttcat |
41471895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 245 - 521
Target Start/End: Complemental strand, 41479173 - 41478896
Alignment:
| Q |
245 |
taagttttccttcacttagctgatttccattgcctaattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaa |
344 |
Q |
| |
|
||||||||| ||| |||| | |||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
41479173 |
taagttttctttcccttatttaatttccattgcctaattaaatgggaaacaccctccttcaatgtggccttccttccttccctaaaattccagagttccg |
41479074 |
T |
|
| Q |
345 |
gtattgagtatcttccactaggattgtactcatttaactcctttagagctgtaactactgcatcatgcaccttatccccgaattcatcctttaaactttt |
444 |
Q |
| |
|
|||||| ||| || |||||||| ||| |||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
41479073 |
gtattgggtacctaccactagggttgcactcgtttaactccttcagagctgtagctactgcatcatgcacctcatccccgaactcatccttcaaactttt |
41478974 |
T |
|
| Q |
445 |
cagtttttcatcttctccgtctaaaatttcctgtgccatatat-taacatatattagatcatggtacatgctgttcat |
521 |
Q |
| |
|
|| |||||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
41478973 |
tagcttttcatcttctccgtctgaaatttcctgcgtggtatatgtaacatatattagatcatggtccatgcagttcat |
41478896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 265 - 521
Target Start/End: Complemental strand, 40753407 - 40753151
Alignment:
| Q |
265 |
tgatttccattgcctaattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaagtattgagtatcttccacta |
364 |
Q |
| |
|
|||||||||| | ||| |||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||| ||| || ||| || |||||| |
|
|
| T |
40753407 |
tgatttccatatcttaactaaatgggaaactccctccttcaacgaagccttccttccttccttaaaattccagagttccggtactgggtacctaccacta |
40753308 |
T |
|
| Q |
365 |
ggattgtactcatttaactcctttagagctgtaactactgcatcatgcaccttatccccgaattcatcctttaaacttttcagtttttcatcttctccgt |
464 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||| | |
|
|
| T |
40753307 |
gggttgtactcatttaactccttcagagctgtagctactgcatcatgcaccttatcccc-aactcatccttcaaacttttcagcttttcatcttctccat |
40753209 |
T |
|
| Q |
465 |
ctaaaatttcctgtgccatatat-taacatatattagatcatggtacatgctgttcat |
521 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||| |||| |||||| |
|
|
| T |
40753208 |
ctaaaatttcctgtgtgatatatctaacatatattagatcatggtttatgcagttcat |
40753151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 270 - 508
Target Start/End: Complemental strand, 41486273 - 41486034
Alignment:
| Q |
270 |
tccattgcctaattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaagtattgagtatcttccactaggatt |
369 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||||| |||||| |||||||| || |
|
|
| T |
41486273 |
tccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggtt |
41486174 |
T |
|
| Q |
370 |
gtactcatttaactcctttagagctgtaactactgcatcatgcaccttatccccgaattcatcctttaaacttttcagtttttcatcttctccgtctaaa |
469 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||| |||||| || |||||||| ||||||||||| |||| ||||||||| |||||| |
|
|
| T |
41486173 |
gtactcatttaactccttcagagctgtagctactgcatcatgcacctcatccccaaactcatccttcaaacttttcagctttttatcttctccatctaaa |
41486074 |
T |
|
| Q |
470 |
atttcctgtgccatatat-taacatatattagatcatggt |
508 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||||||| |
|
|
| T |
41486073 |
atttcctgtgtgatatatcttacatatattagatcatggt |
41486034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University