View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_low_12 (Length: 478)
Name: NF11402_low_12
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 20974826 - 20974351
Alignment:
| Q |
19 |
agaattgcatttgcatttgagaaatatgacatggttacatttaataattccaatttcttaaattattatcagtgtca--------gtatcgtgtccgtgg |
110 |
Q |
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| T |
20974826 |
agaattgcatttgcatttgagaaatatgacatggttacatttaataattccaatttcttaaattattatcagtgtcaatgtgtcagtatcgtgtccgtgc |
20974727 |
T |
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| Q |
111 |
ttcaaaggcttcaaaggttaacattgattcatagataaagagagccttggagctagagttgttgtaacttaccttcttatttttgtatgattcagacatt |
210 |
Q |
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| T |
20974726 |
ttcaaaggcttcaaaggttaacattgattcatagataaagagatccttggagctagagttgttgtaacttaccttcttatttttgtatgattcagacatt |
20974627 |
T |
|
| Q |
211 |
ggagttgaggaaagctgaccaaaagtttcaacacaaaaatgtcaccattatatgaagtccaaatacaatgatgtaatcaatgatnnnnnnnnttcaaaat |
310 |
Q |
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| T |
20974626 |
ggagttgaggaaagctgaccaaaagtttcaacacaaaaatgtcaccattatatgaagtccaaatacaatgatgtaatcaatgataaaaaaaattcaaatt |
20974527 |
T |
|
| Q |
311 |
ctacataccatttcatcaaggttcttccacacacttgacatatcacagatagattttgagcaaacaggacatgagtacctgaatgttcaaaagagtgaat |
410 |
Q |
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| T |
20974526 |
ctacataccatttcatcaaggttcttccacacacttgacatatcacagatagattttgagcaaacaggacacgagtacctgaatgttcaaaagagtgaat |
20974427 |
T |
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| Q |
411 |
----------agctaaaacttataaagtataacatttcaatccttcatttgatacacatatattcccttacctatg |
476 |
Q |
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| T |
20974426 |
taataccataagctaaaacttataaagtataacatttcaatccttcattttaaacatatatattcccttacctatg |
20974351 |
T |
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