View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_low_13 (Length: 471)
Name: NF11402_low_13
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Complemental strand, 45695308 - 45694874
Alignment:
| Q |
19 |
atgaacctggtgccaaaacaaatgactttgctgccacaaataaattttctttgcttgatagagaaagtaattgtattcaagtatttagtgactctcataa |
118 |
Q |
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| T |
45695308 |
atgaacctggtgccagaacaaatgactttgctgccacaaataaattttctttgcttgatagaaaaagtaattgtattcaagtatttagtgactctcataa |
45695209 |
T |
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| Q |
119 |
acaagggatcctttccaagggttcttcacttgcagttgaagattttgatacctctgaactaaaaactagcaccaatcagttaaatatgtcgtcgttgttg |
218 |
Q |
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| T |
45695208 |
acaagggatcctttccaagggttcttcacttgcagttgaagattttgatacctctgaactaaaaactagcaccaatcagttaaatatgtcatcgttgttg |
45695109 |
T |
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| Q |
219 |
caacaatgtcaaccctcattcgaatcaattagatttagagaatcaggtttaagtgagaataatacaaaaggtaatgcaaaccagcatgcaccttgtgaag |
318 |
Q |
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| T |
45695108 |
caacaatgtcaaccctcattcgaatcaattagatttagagaatcaggtttaagtgagaataatacaaaaggtaatgcaaaccagcatgcaccttgtgaag |
45695009 |
T |
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| Q |
319 |
aaatctctcatattccaccttcctcaaccgtaatgaatttcacccattttgcaaaacctgcggctattgtgaaagctaatcttcaaaacattggtttctc |
418 |
Q |
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| T |
45695008 |
aaatctctcatgttccatcttcctcaaccgtaatgaatttcacccattttgcaaaacctgcggctattgtgaaagctaatcttcaaaacattggtttctc |
45694909 |
T |
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| Q |
419 |
ttcatcaagatcagaacgtgtgggagcaaagaaca |
453 |
Q |
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| T |
45694908 |
ttcatcaagatcagaacgtgtgggagcaaagaaca |
45694874 |
T |
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Back To:
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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 37934399 - 37934463
Alignment:
| Q |
348 |
gtaatgaatttcacccattttgcaaaacctgcggctattgtgaaagctaatcttcaaaacattgg |
412 |
Q |
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| T |
37934399 |
gtaatgaatttttcccattttgcaaggcctgcagctattgtgagagctaatcttcagaacattgg |
37934463 |
T |
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