View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_low_14 (Length: 434)
Name: NF11402_low_14
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 28156691 - 28156265
Alignment:
| Q |
1 |
tcaagtacttcaaaccagtttgattaaaaccaggaaccggaccggtgaacaaattatcttgcaagtagagaacatacaaccgcggaaccttaaccaacga |
100 |
Q |
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| T |
28156691 |
tcaagtacttcaaaccagtttgattaaaacgaggaaccgaaccggtgaacaaattatcttgcaagtagagaacatacaaccgcggaaccttaaccaacga |
28156592 |
T |
|
| Q |
101 |
cgccggaatctcgccggagattctattaccagacagaacaataactttaacacggtgaagaacggaaacagaaaccggaaactgaccggagaaatgatta |
200 |
Q |
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| T |
28156591 |
cgccggaatctcgccggagattctattaccagacagaacaataactttaacacggtgaagaacggaaacagaaaccggaaactgaccggagaaatcatta |
28156492 |
T |
|
| Q |
201 |
tcattaagatatagagatttgagattaacaagatttgagagattaggaatttgacccgaaagtgagtttcctttgaaactaagaactcgaagttgatcca |
300 |
Q |
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| T |
28156491 |
tcattaagatatagagatttgagattaacaagatttgaaagattaggaatttgacccgaaagcgagtttcctttgaaactaagaactcgaagttgatcca |
28156392 |
T |
|
| Q |
301 |
aacggtttaaaatgtttgaatctaatttcccagttaagttgaaatattcgagtactagctttctaactttgcctttgtaacaatctttaactcccaccca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28156391 |
aacggtttaaaatgtttgaatctaatttcccagttaagttgaaatattcgagtactagctttctaactttgcctttgtaacaatctttaactcccaccca |
28156292 |
T |
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| Q |
401 |
agtgcaaacatcattgttcttcttctc |
427 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
28156291 |
agtgcaaacatcatcgttcttcttctc |
28156265 |
T |
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