View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11402_low_16 (Length: 414)

Name: NF11402_low_16
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11402_low_16
NF11402_low_16
[»] chr3 (3 HSPs)
chr3 (36-400)||(51113944-51114308)
chr3 (303-382)||(514909-514988)
chr3 (289-329)||(27006006-27006046)
[»] chr4 (11 HSPs)
chr4 (279-400)||(55505268-55505389)
chr4 (275-374)||(640726-640825)
chr4 (296-400)||(1524646-1524750)
chr4 (275-400)||(546724-546849)
chr4 (275-366)||(553290-553381)
chr4 (288-388)||(1552945-1553045)
chr4 (303-400)||(12121620-12121717)
chr4 (294-337)||(1508229-1508272)
chr4 (310-400)||(1513567-1513657)
chr4 (303-401)||(1545612-1545710)
chr4 (279-325)||(6006142-6006188)
[»] chr8 (2 HSPs)
chr8 (275-380)||(32151112-32151217)
chr8 (289-357)||(27922333-27922401)
[»] chr6 (1 HSPs)
chr6 (275-354)||(9411166-9411245)
[»] chr1 (1 HSPs)
chr1 (279-333)||(43634012-43634066)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 36 - 400
Target Start/End: Complemental strand, 51114308 - 51113944
Alignment:
Q  36 aataaaaacatctagtctagcgtataatataataaaagggataaataagttatatccgtaactaaatacatatatgtaagttgacatttataaaataaat 135  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51114308 aataaaaacatctagtctagcatataatataataaaagggataaataagttaaatccgtaactaaatacatatatgtaagttgacatttataaaataaat 51114209  T
Q  136 taatttctcatataagtaaatccgtaaacaacaaacaacttgcatttcagagtttatacttcagaagagttgtttcatgtttcagacagctaccaaacaa 235  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51114208 taatttctcatataagtaaatccgtaatcaacaaacaacttgcatttcagagtttatacttcagcagagttgtttcatgtttcagacagctaccaaacaa 51114109  T
Q  236 agcagttgtggctcaagtagaatttcattttctcggttgaatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggc 335  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51114108 agcagttgtggctcaagtagaatttcattttctcgcttgaatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggc 51114009  T
Q  336 aacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcattttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51114008 aacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcattttt 51113944  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 382
Target Start/End: Complemental strand, 514988 - 514909
Alignment:
Q  303 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctc 382  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||  ||||||||||  ||||||  ||||||| |||||||    
T  514988 tctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctc 514909  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 27006046 - 27006006
Alignment:
Q  289 ggagctgttatttctctcaatgatggccttgaaaatatcat 329  Q
    |||||||| |||| ||||| |||||||||||||||||||||    
T  27006046 ggagctgtaatttttctcagtgatggccttgaaaatatcat 27006006  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 279 - 400
Target Start/End: Complemental strand, 55505389 - 55505268
Alignment:
Q  279 aaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatc 378  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||| ||||||| |||||| | ||| ||||||||||  |||||| || || || |||    
T  55505389 aaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatc 55505290  T
Q  379 tctcctagttttgtgcattttt 400  Q
    |||| ||||| |||||| ||||    
T  55505289 tctcttagttgtgtgcagtttt 55505268  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 640726 - 640825
Alignment:
Q  275 aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaatt 374  Q
    |||||||||||||||||| |  ||| | ||||||||||||||||||||||| ||||||| |||| | |||||||| |||||||  |||||||||||||||    
T  640726 aatcaaaaccaggtggagttactatctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactttattacaaccctttaaatt 640825  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 296 - 400
Target Start/End: Complemental strand, 1524750 - 1524646
Alignment:
Q  296 ttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgca 395  Q
    |||| |||||||||||||| ||||| |||| |||||||||||||||  ||||||| |||||| |||||||| | |||||||||||||  |||| ||||||    
T  1524750 ttatctctctcaatgatggtcttgataatagcattgaggcaacaaagctagcatgaactttacaacaacccctcaaattaatctctctcagttgtgtgca 1524651  T
Q  396 ttttt 400  Q
     ||||    
T  1524650 gtttt 1524646  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 400
Target Start/End: Original strand, 546724 - 546849
Alignment:
Q  275 aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaatt 374  Q
    |||| ||||||| ||||||| |||| | |||||||||||||||| |||||| |||||| |||||   |||| ||| |||||||  |||| || |||||||    
T  546724 aatccaaaccagatggagctattatctttctcaatgatggccttaaaaataacattgaagcaacggcattaacattcactttattacaagcccttaaatt 546823  T
Q  375 aatctctcctagttttgtgcattttt 400  Q
     ||||||| |||||||||||| ||||    
T  546824 gatctctcttagttttgtgcagtttt 546849  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 366
Target Start/End: Original strand, 553290 - 553381
Alignment:
Q  275 aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccc 366  Q
    ||||||||||||||||||||  ||| | ||||||||||| || ||||  || |||||||||||||| ||| ||||||||||||  |||||||    
T  553290 aatcaaaaccaggtggagctcctatctttctcaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaaccc 553381  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 388
Target Start/End: Complemental strand, 1553045 - 1552945
Alignment:
Q  288 tggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagt 387  Q
    |||||| ||||| | ||||||||||||||||||||||| || ||| ||||||| || |  || |||||||| |||||| || ||||| ||||||| ||||    
T  1553045 tggagcagttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagt 1552946  T
Q  388 t 388  Q
    |    
T  1552945 t 1552945  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 400
Target Start/End: Complemental strand, 12121717 - 12121620
Alignment:
Q  303 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcattttt 400  Q
    |||||||||||||||||||||||||| |||||||| || || |  |||||||| || ||||   || ||||  ||||||| ||||| |||||||||||    
T  12121717 tctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcattttt 12121620  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 1508272 - 1508229
Alignment:
Q  294 tgttatttctctcaatgatggccttgaaaatatcattgaggcaa 337  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||    
T  1508272 tgttatttttctcaacgatggccttgaaaatatcaatgaggcaa 1508229  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 400
Target Start/End: Complemental strand, 1513657 - 1513567
Alignment:
Q  310 gatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcattttt 400  Q
    ||||||||||||||||||| |||||||| || || | ||| ||||||| |||||   || ||||| |||||||  |||| |||||||||||    
T  1513657 gatggccttgaaaatatcaatgaggcaagaacatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcattttt 1513567  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 401
Target Start/End: Original strand, 1545612 - 1545710
Alignment:
Q  303 tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcctagttttgtgcatttttt 401  Q
    |||||||||||||||||| ||||  | | | |||| || ||||||||||||||||  ||||||| | ||||| ||| ||| ||||| |||||| |||||    
T  1545612 tctcaatgatggccttgataatactaataaagcaataacattagcatgcactttatcacaacccctcaaattgatcactcttagttgtgtgcagttttt 1545710  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 6006142 - 6006188
Alignment:
Q  279 aaaaccaggtggagctgttatttctctcaatgatggccttgaaaata 325  Q
    ||||||||||||||| ||||| | ||||||||||||||||| |||||    
T  6006142 aaaaccaggtggagcagttatctttctcaatgatggccttgtaaata 6006188  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 380
Target Start/End: Original strand, 32151112 - 32151217
Alignment:
Q  275 aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaatt 374  Q
    ||||| ||| ||||||||| ||||| | ||||||||||||||||||||||| ||||    |||||| || ||||||||||| |  ||||||| |||||||    
T  32151112 aatcataacgaggtggagcagttatctttctcaatgatggccttgaaaataccattttatcaacaatatcagcatgcacttgatcacaaccccttaaatt 32151211  T
Q  375 aatctc 380  Q
     |||||    
T  32151212 gatctc 32151217  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 27922333 - 27922401
Alignment:
Q  289 ggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcacttta 357  Q
    ||||||||||| | |||||| |||||||||||| ||| ||| || | ||||| ||||||||| ||||||    
T  27922333 ggagctgttatctgtctcaacgatggccttgaagataccatcgaagaaacaatattagcatgtacttta 27922401  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 354
Target Start/End: Original strand, 9411166 - 9411245
Alignment:
Q  275 aatcaaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcact 354  Q
    |||||||||||||||||| | |||| |  |||||||| ||||||||||||| |||   | |||||| |||||||||||||    
T  9411166 aatcaaaaccaggtggagtttttatcttgctcaatgacggccttgaaaataccatatcgtcaacaatattagcatgcact 9411245  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 43634012 - 43634066
Alignment:
Q  279 aaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgag 333  Q
    ||||| |||||| ||| |||| | ||||||||||||||||||||||| |||||||    
T  43634012 aaaacgaggtggcgctattatctttctcaatgatggccttgaaaataccattgag 43634066  T

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