View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_low_23 (Length: 339)
Name: NF11402_low_23
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 2785488 - 2785650
Alignment:
| Q |
19 |
gtatgagtgacccatttgtgtttcagaaacatacatggcatggcaccaccaccattccatgtacatgatgagcagttacgacttaccattatcgaagatc |
118 |
Q |
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| T |
2785488 |
gtatgagtgacccatttttgtttcagaaacatacatggcatggcaccaccaccattccatgtacatgatgagcagttacgacttaccattatcgaagatc |
2785587 |
T |
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| Q |
119 |
gaacccatttaggttggtttgttgatattgatttgggatttaggagtgtatttctctttaacg |
181 |
Q |
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| T |
2785588 |
gaacccatttaggttgatttgttgatattggtttgggatttaggagtgtgttcctctttaacg |
2785650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 199 - 335
Target Start/End: Original strand, 2785640 - 2785776
Alignment:
| Q |
199 |
cctctttaacgttttagatttgattcttttcgctgtcaatttaggtgggttaatttagttccttcaagaagaaaattaaagatcgatttgtattttaaca |
298 |
Q |
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| T |
2785640 |
cctctttaacgttttagatttgattcttttcgctgtcaatttgggtgggttaatttagtttattcaagaagaaaattaaagatcgatttgtattttaaca |
2785739 |
T |
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| Q |
299 |
caatattgtttaatttaggtggtttatttgtccataa |
335 |
Q |
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| T |
2785740 |
caatattgtttaatttaggtggtttatttgtccataa |
2785776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 4688650 - 4688688
Alignment:
| Q |
235 |
caatttaggtgggttaatttagttccttcaagaagaaaa |
273 |
Q |
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| T |
4688650 |
caatttaggtgggttaatttagtttcttcaaaaagaaaa |
4688688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 4412419 - 4412467
Alignment:
| Q |
204 |
ttaacgttttagatttgattcttttcgctgtcaatttaggtgggttaat |
252 |
Q |
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| T |
4412419 |
ttaaggttttagatttgattccttccgatatcaatttaggtgggttaat |
4412467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 42885207 - 42885240
Alignment:
| Q |
232 |
tgtcaatttaggtgggttaatttagttccttcaa |
265 |
Q |
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| T |
42885207 |
tgtcaatttaggtgggttaatttagtttcttcaa |
42885240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 40198047 - 40198083
Alignment:
| Q |
220 |
gattcttttcgctgtcaatttaggtgggttaatttag |
256 |
Q |
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| T |
40198047 |
gattcttttcgatgtcaatttaggtggtttaatttag |
40198083 |
T |
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