View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11402_low_27 (Length: 296)

Name: NF11402_low_27
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11402_low_27
NF11402_low_27
[»] chr4 (1 HSPs)
chr4 (1-284)||(31200659-31200953)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 31200659 - 31200953
Alignment:
Q  1 actgaatcggacaattcaaccgattgagccttacaccaaatctttaatacggttaagttactttgggggtttgatcgcagt-----------tcgaacag 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||           ||||||||    
T  31200659 actgaatcggacaattcaaccgattgagccttacaccaaatctttaatacggttcagttactttgggggtttgatcgcagtttcgtctcagttcgaacag 31200758  T
Q  90 ttcaagatagttgaactataatccaaattctccccgatttgatgtcaagttcgattttaaaaaactatcagtaattcacactctctaaatgaaaagcttc 189  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31200759 ttcaagatagttgaaccataatccaaattctccccggtttgatgtcaagttcgattttaaaaaactgtcagtaattcacactctctaaatgaaaagcttc 31200858  T
Q  190 ttccatggccctcaaaactgacaaaagctctgcagagatcacgccatcgggttccaaattggtaatgtcattcctgttaaagggagatgtttttt 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31200859 ttccatggccctcaaaactgacaaaagctctgcagagatcacgccatcgggttccaaattggtaatgtcattcctgttaaagggagatgtttttt 31200953  T

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