View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_low_28 (Length: 293)
Name: NF11402_low_28
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 52586274 - 52586540
Alignment:
| Q |
18 |
ctttgtcattctgcaccaaacatttgagtaattcaacccactacatcaagatagagttacaaaacttggatacatcctatcctaaagggcaagtacacca |
117 |
Q |
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| T |
52586274 |
ctttgtcattctgcaccaaacatttgagtaattcaacccactacatcaagatagagttacaaaacttggatacatcctatcctaaagggcaagtacacca |
52586373 |
T |
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| Q |
118 |
atctgcatattttaaattagtcggtctactttataaataaaccatacccaaaaagtttctttg-ctcttcctaaactaggaatggtgatccaaagccata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52586374 |
atctgcatattttaaattagtcggtctactttataaataaaccatacccaaaaagtttctttgactcttcctaaactaggaatggtgatccaaagccata |
52586473 |
T |
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| Q |
217 |
cctctaaaaataatgtaattccacaacctccacagcgaacaagtaacaaccaaccaaattcattcat |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52586474 |
cctctaaaaataatgtaattccacaacctccacagcgaacaagtaacaaccaaccaaattcattcat |
52586540 |
T |
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