View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11402_low_3 (Length: 656)
Name: NF11402_low_3
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 314 - 615
Target Start/End: Complemental strand, 12887814 - 12887511
Alignment:
| Q |
314 |
aattgaaccttattgttataaaaaaga--agaagtaattgaacaattaagaaaagaagaagttccaacacaaaatacaactttaataagttgaaagaatc |
411 |
Q |
| |
|
|||| |||||||||||||||||||| | |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12887814 |
aattaaaccttattgttataaaaaaaacaagaaataattgaacgattaagaaaagaagaagttccaacacaaaagacaactttaataagttgaaagaatc |
12887715 |
T |
|
| Q |
412 |
tctatgttttccattttaggtagaatataagccaataacactttatctttgtttctcagcataattcctcttcttcgaaatcataaacttttcccatgtg |
511 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||| | |||||||| |
|
|
| T |
12887714 |
tctatgttttccattttaggtagaatattagccaataagactttatctttgtttctctgcatacatcctcttattcgaaatcataaactctgcccatgtg |
12887615 |
T |
|
| Q |
512 |
aaaaatggctaagaaggaagagaaagaaaaagattgaatagatgaaccatacacacaagaataatcaaagcctctcccatcaatttctggcaaaatattc |
611 |
Q |
| |
|
|||||| ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
12887614 |
aaaaatagctaatagggaagagaaagaaaaagattgaatagatgaaccatacacaaaagaataatcaaagcttcacccatcaatttctggcaaaatattc |
12887515 |
T |
|
| Q |
612 |
gagt |
615 |
Q |
| |
|
|||| |
|
|
| T |
12887514 |
gagt |
12887511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 75 - 325
Target Start/End: Complemental strand, 12889529 - 12889279
Alignment:
| Q |
75 |
tctaaaagaatcttccgtaataaaaggtggcatagcatcccacaaggtaatccaatctataatatggtcattgtttgctaatttatccgcacattcatta |
174 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
12889529 |
tctaaaagaatcttccataataaaaggtggcatagcatcccacaagataattcaatctataacatggtcatggtttgctaatttatccgcacatccatta |
12889430 |
T |
|
| Q |
175 |
ccttccccgtatatatgttacaagataacctgaacgcatatatgacttatacgtaagaagagcgtagtatataaataactcgcggtgacaatcatgattt |
274 |
Q |
| |
|
||||||| ||||| |||| | ||||||||||||| ||| |||||||| ||||||||||| ||||||| |||||||||| ||||||| |||||| |||| |
|
|
| T |
12889429 |
ccttccctgtatacatgtgaagagataacctgaacacatgtatgacttgcacgtaagaagaccgtagtacataaataacttgcggtgaaaatcatcattt |
12889330 |
T |
|
| Q |
275 |
atagattttgtggacaatagttttcaacaattatacaataattgaacctta |
325 |
Q |
| |
|
||||||||| ||||||||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
12889329 |
atagattttatggacaatattttttaacaattattcaataattgaacctta |
12889279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University