View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11402_low_32 (Length: 280)

Name: NF11402_low_32
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11402_low_32
NF11402_low_32
[»] chr7 (7 HSPs)
chr7 (34-269)||(5376279-5376514)
chr7 (16-171)||(5368062-5368214)
chr7 (56-185)||(36853046-36853175)
chr7 (39-138)||(35169949-35170048)
chr7 (74-188)||(24547662-24547777)
chr7 (63-112)||(46214467-46214516)
chr7 (211-263)||(5367415-5367467)
[»] chr8 (14 HSPs)
chr8 (39-135)||(26819258-26819354)
chr8 (61-118)||(3017471-3017528)
chr8 (47-112)||(26762851-26762916)
chr8 (68-117)||(39560339-39560388)
chr8 (62-114)||(10744257-10744309)
chr8 (39-117)||(30011758-30011836)
chr8 (46-117)||(16527482-16527553)
chr8 (89-184)||(34338653-34338748)
chr8 (72-117)||(2309154-2309200)
chr8 (60-114)||(43059451-43059505)
chr8 (68-117)||(29705899-29705948)
chr8 (120-176)||(4670602-4670657)
chr8 (62-131)||(16168305-16168376)
chr8 (53-117)||(31188874-31188938)
[»] chr6 (6 HSPs)
chr6 (53-133)||(733580-733662)
chr6 (61-118)||(18361298-18361355)
chr6 (67-112)||(31650307-31650352)
chr6 (60-139)||(8782972-8783051)
chr6 (53-116)||(25094709-25094772)
chr6 (47-116)||(7952307-7952376)
[»] chr5 (8 HSPs)
chr5 (67-146)||(36261960-36262039)
chr5 (65-184)||(35035571-35035691)
chr5 (63-114)||(18871012-18871063)
chr5 (67-117)||(36639769-36639819)
chr5 (67-133)||(16230759-16230827)
chr5 (46-110)||(16215390-16215454)
chr5 (66-117)||(16962198-16962248)
chr5 (40-130)||(7705307-7705397)
[»] chr2 (5 HSPs)
chr2 (47-182)||(10231799-10231935)
chr2 (62-159)||(9529506-9529600)
chr2 (62-116)||(5129658-5129712)
chr2 (60-97)||(35991377-35991414)
chr2 (64-116)||(44250661-44250713)
[»] chr1 (6 HSPs)
chr1 (39-131)||(14303921-14304015)
chr1 (100-182)||(16979581-16979664)
chr1 (39-117)||(24126880-24126957)
chr1 (76-110)||(32408099-32408133)
chr1 (47-100)||(15867621-15867674)
chr1 (63-188)||(34796781-34796907)
[»] chr4 (3 HSPs)
chr4 (47-116)||(1132154-1132223)
chr4 (47-117)||(10997329-10997399)
chr4 (54-107)||(18966004-18966057)
[»] chr3 (5 HSPs)
chr3 (60-118)||(48183708-48183765)
chr3 (71-133)||(48553069-48553131)
chr3 (68-117)||(38900006-38900055)
chr3 (67-112)||(43220827-43220872)
chr3 (62-131)||(44009252-44009323)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 34 - 269
Target Start/End: Original strand, 5376279 - 5376514
Alignment:
Q  34 gtgtattacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttg 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  5376279 gtgtattacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcgcacatggttggttgtgatttt 5376378  T
Q  134 ctgacgttgtaaagcctttttacactgacaatatatcaaaattaaactcattatttaaaacacgtcttttaatcattcatttagtttactcttagtcgac 233  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5376379 ctaatgttgtaaagcctttttacactgacaatatatcaaaattaaactcattatttaaaacacgtcttttaatcattcatttagtttattcttagtcgac 5376478  T
Q  234 atgagactgctcactcacttgtatttcaaaacctat 269  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5376479 atgagactgttcactcacttgtatttcaaaacctat 5376514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 5368214 - 5368062
Alignment:
Q  16 aattcagataaattgtcggtgtattacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac 115  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||   || ||||||||||||||      
T  5368214 aattcatataaattgtcagtgtattacacgttcaatgaatcatgatcatcagatcattaaaaacgtttggctgtaatc---acaacttctaaagtcacga 5368118  T
Q  116 atggttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatca 171  Q
    ||| ||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  5368117 atgattggttgtgattttctgatgctgtaaagcctttttacactgacaatatatca 5368062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 36853175 - 36853046
Alignment:
Q  56 catgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac--atggttggttgtgatttgctgacgttgtaaagcctttt 153  Q
    |||||| ||||||||| ||||||  ||||| | |||||||||||||||||||||||||||  ||| ||||||||||||| |||||  ||||||  |||||    
T  36853175 catgatagtcagatcaataaaaatatttgattataatcataactacttctaaagtcacacatatgattggttgtgatttactgacaatgtaaa--ctttt 36853078  T
Q  154 tacactgacaatatatcaaaattaaactcatt 185  Q
    || || |||| | |||||||||||||||||||    
T  36853077 tataccgacagtgtatcaaaattaaactcatt 36853046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 35169949 - 35170048
Alignment:
Q  39 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttgctgac 138  Q
    ||||||| ||||| |||  | ||||| |||| |||||| | |||||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  35169949 ttacactgtcaatcaattgtaatcgttagattattaaagatgtttgactttaatcataactacttctaaagtcacacatgattggttatgatttgttgac 35170048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 24547777 - 24547662
Alignment:
Q  74 aaaaacgtttgactgtaatcataactacttctaaagtcac--acatggttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatca 171  Q
    ||||| ||||||||  ||||||||||||||||||| ||||  | ||| |||||||||||||  ||||  ||||||  ||||||||||||||  | |||||    
T  24547777 aaaaatgtttgacttcaatcataactacttctaaaatcacagatatgattggttgtgatttattgacagtgtaaa-actttttacactgacggtgtatca 24547679  T
Q  172 aaattaaactcattatt 188  Q
    || | |||||| |||||    
T  24547678 aattcaaactctttatt 24547662  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 46214467 - 46214516
Alignment:
Q  63 gtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtca 112  Q
    |||||||||| |||||||||||||| ||||||| |  |||||||||||||    
T  46214467 gtcagatcataaaaaacgtttgactttaatcattatgacttctaaagtca 46214516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 5367467 - 5367415
Alignment:
Q  211 catttagtttactcttagtcgacatgagactgctcactcacttgtatttcaaa 263  Q
    ||||||||||| |||||||||||||  |||| |  ||||||||||||||||||    
T  5367467 catttagtttattcttagtcgacattggactacctactcacttgtatttcaaa 5367415  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 26819258 - 26819354
Alignment:
Q  39 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttgct 135  Q
    |||||| |||||| ||| |  ||||| ||||||||||||| |||||||| | |||  ||||||||||||||||||||||| ||||||||||||||||    
T  26819258 ttacacattcaatcaattacaatcgttagatcattaaaaatgtttgacttttatcgcaactacttctaaagtcacacatgattggttgtgatttgct 26819354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 3017528 - 3017471
Alignment:
Q  61 tcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatg 118  Q
    |||||||||||||||||| |||||||| |||||||||||||||  |||||||||||||    
T  3017528 tcgtcagatcattaaaaaagtttgactttaatcataactactttgaaagtcacacatg 3017471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 26762851 - 26762916
Alignment:
Q  47 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtca 112  Q
    ||||| |||||| ||| |||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  26762851 tcaatcaatcataatcctcagatcagtaaaaacgtttgactttaatcataattacttctaaagtca 26762916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 39560388 - 39560339
Alignment:
Q  68 atcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 117  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| ||||    
T  39560388 atcattaaaaatgtttgactttaatcataactacttctaaagtcatacat 39560339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 10744257 - 10744309
Alignment:
Q  62 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcaca 114  Q
    ||||| |||||||||||||||||||| |||| |||||| ||||||||||||||    
T  10744257 cgtcacatcattaaaaacgtttgactttaattataactgcttctaaagtcaca 10744309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 30011836 - 30011758
Alignment:
Q  39 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 117  Q
    ||||||| ||||| ||||||  | |||| | ||||||||| ||||||||  ||||||||||||||||||| ||||||||    
T  30011836 ttacactgtcaatcaatcatacttgtcataacattaaaaatgtttgacttcaatcataactacttctaaaatcacacat 30011758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 16527553 - 16527482
Alignment:
Q  46 ttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 117  Q
    |||||| |||| | ||| |||||||||||| ||||||||| | || || |||||||||||||||||| ||||    
T  16527553 ttcaatcaatcgtaatcatcagatcattaagaacgtttgagtttagtcgtaactacttctaaagtcatacat 16527482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 34338748 - 34338653
Alignment:
Q  89 taatcataactacttctaaagtcacacatggttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatcaaaattaaactcat 184  Q
    ||||||||||||||| |||||||||||||| || ||||| |||   ||||| |||||    ||||||||| |||| | |||||||||| |||||||    
T  34338748 taatcataactacttttaaagtcacacatgatttgttgtcattccttgacgatgtaacatttttttacacggacagtgtatcaaaattgaactcat 34338653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 2309154 - 2309200
Alignment:
Q  72 ttaaaaacgtttgactgtaatc-ataactacttctaaagtcacacat 117  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  2309154 ttaaaaacatttggctgtaatcgataactacttctaaagtcacacat 2309200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 43059451 - 43059505
Alignment:
Q  60 atcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcaca 114  Q
    ||||||| ||||| |||||  ||||||| |||| |||||||||||||||||||||    
T  43059451 atcgtcaaatcatcaaaaaactttgactttaataataactacttctaaagtcaca 43059505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 29705899 - 29705948
Alignment:
Q  68 atcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 117  Q
    ||||||| |||||||||||| | |||||||| ||||||||||||| ||||    
T  29705899 atcattataaacgtttgacttttatcataaccacttctaaagtcatacat 29705948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 4670657 - 4670602
Alignment:
Q  120 ttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatcaaaatt 176  Q
    |||||||||||||| ||||  |||||| | ||||||||||||| |||||||||||||    
T  4670657 ttggttgtgatttgttgaccatgtaaaac-tttttacactgacgatatatcaaaatt 4670602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 16168305 - 16168376
Alignment:
Q  62 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagt--cacacatggttggttgtgatt 131  Q
    ||||| |||||||||||| ||||||| ||||||| |||| |  ||||||  |||||||| ||||||||||||    
T  16168305 cgtcaaatcattaaaaacatttgactttaatcatcactaatattaaagtgacacacatgattggttgtgatt 16168376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 31188874 - 31188938
Alignment:
Q  53 aatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 117  Q
    |||||| || |||||||||||| ||| |||| |||  |||||||| |||||| ||||||||||||    
T  31188874 aatcataattgtcagatcattacaaatgtttaacttcaatcataattacttcgaaagtcacacat 31188938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 733580 - 733662
Alignment:
Q  53 aatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac--atggttggttgtgatttg 133  Q
    |||||| | ||| ||||||||||||||||  |||| ||||| |||||||||||||||||||||  ||||||||||||||||||    
T  733580 aatcataaccgttagatcattaaaaacgtccgactttaatcgtaactacttctaaagtcacacgtatggttggttgtgatttg 733662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 18361355 - 18361298
Alignment:
Q  61 tcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatg 118  Q
    ||||||||||||||||||||||| ||| |||||||||||||||  |||||||||||||    
T  18361355 tcgtcagatcattaaaaacgtttaactttaatcataactactttgaaagtcacacatg 18361298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 31650307 - 31650352
Alignment:
Q  67 gatcattaaaaacgtttgactgtaatcataactacttctaaagtca 112  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||    
T  31650307 gatcattaaaaatgtttgactttaatcataactacttctaaagtca 31650352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 8782972 - 8783051
Alignment:
Q  60 atcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtc--acacatggttggttgtgatttgctgacg 139  Q
    |||||| ||||||||||||  ||||||| |||||||||||||||| ||||||  | | ||| |||||||||||||| |||||    
T  8782972 atcgtccgatcattaaaaa--tttgactttaatcataactacttcaaaagtcatatatatgattggttgtgatttgttgacg 8783051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 25094772 - 25094709
Alignment:
Q  53 aatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 116  Q
    |||||| ||||||  ||||||||| | |||||||| ||||||||| ||||| ||||||||||||    
T  25094772 aatcataatcgtctaatcattaaacatgtttgactttaatcataagtacttttaaagtcacaca 25094709  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 7952307 - 7952376
Alignment:
Q  47 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 116  Q
    ||||| |||||| | |||| ||||||||||||| ||| ||| | |||||||| |||||||||| ||||||    
T  7952307 tcaatcaatcataaccgtcggatcattaaaaacatttcacttttatcataacaacttctaaagccacaca 7952376  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 36262039 - 36261960
Alignment:
Q  67 gatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttgctgacgttgtaaa 146  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| ||  ||| || ||||||||||||| ||||||    
T  36262039 gatcattaaaaacatttggctttaatcataactacttctaaagtcacatataattgtttctgatttgctgacggtgtaaa 36261960  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 35035571 - 35035691
Alignment:
Q  65 cagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac--atggttggttgtgatttgctgacgttgtaaagcctttttacactgac 162  Q
    ||||||| ||||||  ||||| | |||||||||||||||||||| ||||||  ||| ||||||||||||| |||||  ||||||   |||||| || |||    
T  35035571 cagatcaataaaaatatttgattttaatcataactacttctaaaatcacacatatgattggttgtgatttactgacaatgtaaa-attttttataccgac 35035669  T
Q  163 aatatatcaaaattaaactcat 184  Q
    | | ||||||||||||||||||    
T  35035670 agtgtatcaaaattaaactcat 35035691  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 18871012 - 18871063
Alignment:
Q  63 gtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcaca 114  Q
    |||||||||||||| |||||||||  |||| |||||||||||||||||||||    
T  18871012 gtcagatcattaaacacgtttgaccttaatgataactacttctaaagtcaca 18871063  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 36639819 - 36639769
Alignment:
Q  67 gatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 117  Q
    ||||||||| ||||||| | | |||||||||||||||||||||||||||||    
T  36639819 gatcattaagaacgtttcaatttaatcataactacttctaaagtcacacat 36639769  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 16230827 - 16230759
Alignment:
Q  67 gatcattaaaaacgtttgactgtaatcataactacttctaaagtc--acacatggttggttgtgatttg 133  Q
    ||||||| |||| |||||||| |||||||||||||||||||| ||  ||| ||| ||||||||||||||    
T  16230827 gatcatttaaaatgtttgactttaatcataactacttctaaaatcaaacatatgattggttgtgatttg 16230759  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 16215390 - 16215454
Alignment:
Q  46 ttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagt 110  Q
    ||||||||||||| || | ||||| |||||||| ||||||||  |||| ||||||||||||||||    
T  16215390 ttcaatgaatcataattgacagattattaaaaatgtttgacttgaatcgtaactacttctaaagt 16215454  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 16962198 - 16962248
Alignment:
Q  66 agatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 117  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||| |||||    
T  16962198 agatcattaaaa-cgtttgactttaatcataactatttctaaagtcgcacat 16962248  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 7705307 - 7705397
Alignment:
Q  40 tacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgat 130  Q
    |||||| ||||| |||||| |  ||||| |||||  |||| ||||||| | |||||||| |||| |||||||||||||| || ||||||||    
T  7705307 tacactgtcaatcaatcataacagtcaggtcattggaaacatttgacttttatcataaccacttttaaagtcacacatgatttgttgtgat 7705397  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 182
Target Start/End: Complemental strand, 10231935 - 10231799
Alignment:
Q  47 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat--ggttggttgtgatttgctgacgttgta 144  Q
    ||||| |||||  ||| |||||||||||||| | ||||||| | |||||||||| ||||||| ||||||||  | ||| |||| || ||  |||  ||||    
T  10231935 tcaatcaatcacaatcatcagatcattaaaatcatttgacttttatcataactatttctaaaatcacacatatgattgattgtaatatgtggacagtgta 10231836  T
Q  145 aagcctttttacactgacaatatatcaaaattaaactc 182  Q
    || | |||||||||||||||||||||||||||||||||    
T  10231835 aaac-tttttacactgacaatatatcaaaattaaactc 10231799  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 9529600 - 9529506
Alignment:
Q  62 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacac--atggttggttgtgatttgctgacgttgtaaagcctttttacact 159  Q
    ||||| ||||||||||||||||||||    | |||| ||||| |||||||||||  ||| |||||||||||||||||| | ||||||  |||||||||||    
T  9529600 cgtcacatcattaaaaacgtttgact----ttataattacttttaaagtcacacatatgattggttgtgatttgctgatgatgtaaa-actttttacact 9529506  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 5129658 - 5129712
Alignment:
Q  62 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 116  Q
    ||||| ||||| |||||| ||||||  ||||||||| ||||||||||||||||||    
T  5129658 cgtcatatcataaaaaacatttgaccttaatcataaatacttctaaagtcacaca 5129712  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 35991414 - 35991377
Alignment:
Q  60 atcgtcagatcattaaaaacgtttgactgtaatcataa 97  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  35991414 atcgtcagatcattaaaaacgtttgactctaataataa 35991377  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 44250713 - 44250661
Alignment:
Q  64 tcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 116  Q
    |||| |||||||||| |||||  | |||||||||||| |||||||||||||||    
T  44250713 tcagctcattaaaaatgtttgcttttaatcataactatttctaaagtcacaca 44250661  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 14303921 - 14304015
Alignment:
Q  39 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtca--cacatggttggttgtgatt 131  Q
    ||||||| ||||| |||||  ||||||||||| ||| ||| |||||||| ||||||||||||||| ||||||||  || ||| ||||||||||||    
T  14303921 ttacactgtcaatcaatcagcatcgtcagatcgttataaaagtttgactttaatcataactacttttaaagtcactcatatgattggttgtgatt 14304015  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 16979664 - 16979581
Alignment:
Q  100 acttctaaagtcacacatg--gttggttgtgatttgctgacgttgtaaagcctttttacactgacaatatatcaaaattaaactc 182  Q
    ||||||||||||||| ||   ||||||||||||||| ||||  |||||| | |||||||||||||| | ||||||||||||||||    
T  16979664 acttctaaagtcacatatattgttggttgtgatttgttgacagtgtaaatc-tttttacactgacagtgtatcaaaattaaactc 16979581  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 24126880 - 24126957
Alignment:
Q  39 ttacactttcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 117  Q
    ||||||| ||||| |||| | ||| |||||||||||||||  ||||||| ||| |||||||||||||||| ||| ||||    
T  24126880 ttacactatcaatcaatcttaatcatcagatcattaaaaaa-tttgactttaaacataactacttctaaaatcaaacat 24126957  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 32408099 - 32408133
Alignment:
Q  76 aaacgtttgactgtaatcataactacttctaaagt 110  Q
    |||||||||||| ||||||||||||||||||||||    
T  32408099 aaacgtttgactttaatcataactacttctaaagt 32408133  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 15867674 - 15867621
Alignment:
Q  47 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataacta 100  Q
    ||||| |||||| ||||||| ||||||||||  |||||||| ||||||||||||    
T  15867674 tcaatcaatcataatcgtcatatcattaaaactgtttgactttaatcataacta 15867621  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 34796907 - 34796781
Alignment:
Q  63 gtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat--ggttggttgtgatttgctgacgttgtaaagcctttttacactg 160  Q
    |||| ||||||||| | |||||| | | |||||||||| |||||| || || |||  |||||||||| || ||||||| |||||||  |||||| || ||    
T  34796907 gtcatatcattaaacatgtttgaattttatcataactaattctaacgtaactcatatggttggttgtcatatgctgacattgtaaa-actttttgcagtg 34796809  T
Q  161 acaatatatcaaaattaaactcattatt 188  Q
    ||| | ||| |||||||| |||||||||    
T  34796808 acagtgtatgaaaattaagctcattatt 34796781  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 1132154 - 1132223
Alignment:
Q  47 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacaca 116  Q
    ||||| |||||| | ||||||||||||| |||| ||||||| | |||||||||| |||||||| ||||||    
T  1132154 tcaatcaatcataaccgtcagatcattagaaacatttgacttttatcataactaattctaaagacacaca 1132223  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 10997399 - 10997329
Alignment:
Q  47 tcaatgaatcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 117  Q
    ||||| |||||| ||||| | ||||||||||||||  |||| |||||||| ||| ||||||||| ||||||    
T  10997399 tcaatcaatcataatcgttatatcattaaaaacgtaagactttaatcatatctatttctaaagttacacat 10997329  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 18966057 - 18966004
Alignment:
Q  54 atcatgatcgtcagatcattaaaaacgtttgactgtaatcataactacttctaa 107  Q
    ||||| ||||||| ||||||||||| |||||||| ||||| |||||| ||||||    
T  18966057 atcataatcgtcatatcattaaaaatgtttgactttaatcgtaactaattctaa 18966004  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 48183708 - 48183765
Alignment:
Q  60 atcgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagtcacacatg 118  Q
    ||||||||||||| ||||||||||||  || | ||| ||||||||||||||||||||||    
T  48183708 atcgtcagatcat-aaaaacgtttgaaagtcaacatgactacttctaaagtcacacatg 48183765  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 48553131 - 48553069
Alignment:
Q  71 attaaaaacgtttgactgtaatcataactacttctaaagtcacacatggttggttgtgatttg 133  Q
    ||||||||| ||||| | |||||||||  ||||||||||||||| ||| ||| ||||||||||    
T  48553131 attaaaaacatttgaatttaatcataaaaacttctaaagtcacatatgattgattgtgatttg 48553069  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 38900006 - 38900055
Alignment:
Q  68 atcattaaaaacgtttgactgtaatcataactacttctaaagtcacacat 117  Q
    ||||||||||||||||||||   ||| ||||||||| |||||||||||||    
T  38900006 atcattaaaaacgtttgacttgtatcctaactacttttaaagtcacacat 38900055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 43220872 - 43220827
Alignment:
Q  67 gatcattaaaaacgtttgactgtaatcataactacttctaaagtca 112  Q
    ||||| ||||||||||||||| |||||||||  |||||||||||||    
T  43220872 gatcaataaaaacgtttgactttaatcataatcacttctaaagtca 43220827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 44009323 - 44009252
Alignment:
Q  62 cgtcagatcattaaaaacgtttgactgtaatcataactacttctaaagt--cacacatggttggttgtgatt 131  Q
    ||||| |||||||||||| ||||||| ||||||| |||| |  ||||||  |||||||| ||||||||||||    
T  44009323 cgtcaaatcattaaaaacatttgactttaatcatcactaatattaaagtgacacacatgattggttgtgatt 44009252  T

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