View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_low_35 (Length: 266)
Name: NF11402_low_35
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 45315001 - 45315235
Alignment:
| Q |
21 |
atagggacaacagaaagaaggtgaaaagaaatgatgaaaaatgaattatggggatctgagtatatagctgaggtgatgaggacctgcatgctatgtgctt |
120 |
Q |
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| T |
45315001 |
atagggacaacagaaagaaggtgaaaagaaatgatgaaaaatgaattatggggatctgagtatatagctgaggtgatgaggacctgcatgctatgtgctt |
45315100 |
T |
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| Q |
121 |
tttcaagaaggggtggcttacgtacattcacatggttaatctggcggagtctggtcgattggaccatggtcctagctccatttctgtcctttcgtatgtc |
220 |
Q |
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| T |
45315101 |
tttcaagaaggggtggcttacatacattcacat-gttaatccggcagagtctggtcgattggaccatggtcctagctccatttctgtcctttcgtatgtc |
45315199 |
T |
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| Q |
221 |
ctcatcatcacacaatgctaaattctggtgtctgtg |
256 |
Q |
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| T |
45315200 |
ctcatcgtcacataatgctaaattctggtgtttgtg |
45315235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 256
Target Start/End: Original strand, 27760935 - 27761177
Alignment:
| Q |
21 |
atagggacaacagaaagaaggtgaaaagaaatgatgaaaaatgaattatggggatctg-------agtatatagctgaggtgatgaggacctgcatgcta |
113 |
Q |
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| T |
27760935 |
atagggacaacagaaagaaggtgaaaagaaaggatgaaaaatgaattatggggatctgaattctgagtatatagctgaagtgatgaggacctgcatgcta |
27761034 |
T |
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| Q |
114 |
tgtgctttttcaagaaggggtggcttacgtacattcacatggttaatctggcggagtctggtcgattggaccatggtcctagctccatttctgtcctttc |
213 |
Q |
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| T |
27761035 |
tgtgctttttcaagaagggatagcttacatacattcacatggttaatccagcagaatctgacagattggaccatggtcctagctccatttctgtcctttt |
27761134 |
T |
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| Q |
214 |
gtatgtcctcatcatcacacaatgctaaattctggtgtctgtg |
256 |
Q |
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| T |
27761135 |
atgtgtcctcatcgtcacataatgctaaattctggtgtttgtg |
27761177 |
T |
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