View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11402_low_36 (Length: 260)

Name: NF11402_low_36
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11402_low_36
NF11402_low_36
[»] chr3 (21 HSPs)
chr3 (1-251)||(20016186-20016434)
chr3 (109-251)||(19956075-19956217)
chr3 (109-251)||(24839959-24840101)
chr3 (118-243)||(19848990-19849115)
chr3 (118-243)||(20036596-20036721)
chr3 (35-207)||(20046040-20046212)
chr3 (116-246)||(19858070-19858200)
chr3 (108-209)||(19812270-19812371)
chr3 (138-247)||(19853532-19853641)
chr3 (109-251)||(19838384-19838526)
chr3 (108-210)||(19943710-19943810)
chr3 (135-242)||(30914660-30914764)
chr3 (118-206)||(19951124-19951212)
chr3 (118-195)||(19989522-19989599)
chr3 (136-251)||(26647022-26647134)
chr3 (138-206)||(19818577-19818645)
chr3 (4-81)||(26646896-26646973)
chr3 (140-205)||(26653174-26653239)
chr3 (4-81)||(19989408-19989485)
chr3 (35-85)||(19838301-19838351)
chr3 (184-249)||(19971677-19971742)
[»] chr8 (4 HSPs)
chr8 (4-211)||(22652113-22652320)
chr8 (138-251)||(22685668-22685778)
chr8 (136-207)||(22689684-22689755)
chr8 (138-207)||(11564163-11564232)
[»] chr4 (2 HSPs)
chr4 (35-207)||(6397767-6397939)
chr4 (35-197)||(6398178-6398340)
[»] chr1 (1 HSPs)
chr1 (118-207)||(1717214-1717303)
[»] chr5 (3 HSPs)
chr5 (139-251)||(9815058-9815167)
chr5 (136-251)||(26354912-26355027)
chr5 (4-74)||(38435286-38435356)
[»] chr7 (8 HSPs)
chr7 (48-153)||(12581117-12581222)
chr7 (150-202)||(12581424-12581476)
chr7 (150-205)||(12497241-12497296)
chr7 (150-205)||(12521106-12521161)
chr7 (48-154)||(12496933-12497039)
chr7 (48-154)||(12520798-12520904)
chr7 (150-207)||(12519821-12519878)
chr7 (150-207)||(12580110-12580167)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 20016434 - 20016186
Alignment:
Q  1 ggcgatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016434 ggcgatcctgttttcatctcacttgaagacacaaaaatgagag--gtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtc 20016337  T
Q  101 acgcgtacacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016336 acgcgtacacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccc 20016237  T
Q  201 tcataaatactcttccgtgaaaagttgtttgtttccgattgctattcatct 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016236 tcataaatactcttccgtgaaaagttgtttgtttccgattgctattcatct 20016186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 19956075 - 19956217
Alignment:
Q  109 acatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaat 208  Q
    |||||| | ||||||||||| |||  |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  19956075 acatcactatggatggatattttcattgataaaggtagtgaaattgaacatgaagcttttcttgctacttggttgtcaatttttgttttccctcataaat 19956174  T
Q  209 actcttccgtgaaaagttgtttgtttccgattgctattcatct 251  Q
    | |||||||||||||||| ||||||||| |||| | |||||||    
T  19956175 attcttccgtgaaaagttatttgtttcctattgttgttcatct 19956217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 24840101 - 24839959
Alignment:
Q  109 acatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaat 208  Q
    |||||| ||||||||||||| |||   ||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24840101 acatcagtgtggatggatattttcatcgataaaggtagtgaagttgagcatgaagcatttcttgctacttggttgtcaatttttgttttccctcataaat 24840002  T
Q  209 actcttccgtgaaaagttgtttgtttccgattgctattcatct 251  Q
    |||||   |||||| ||| |||||||||  ||||| |||||||    
T  24840001 actctctagtgaaatgttctttgtttcctgttgctgttcatct 24839959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 19848990 - 19849115
Alignment:
Q  118 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccg 217  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||| ||  |    
T  19848990 tggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactatttgg 19849089  T
Q  218 tgaaaagttgtttgtttccgattgct 243  Q
    ||||||||| ||||||||| ||||||    
T  19849090 tgaaaagttctttgtttcctattgct 19849115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 20036721 - 20036596
Alignment:
Q  118 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccg 217  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||| ||  |    
T  20036721 tggatggatattttcattgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcactttttgtttttcctcataaaaactatttgg 20036622  T
Q  218 tgaaaagttgtttgtttccgattgct 243  Q
    ||||||||| ||||||||| ||||||    
T  20036621 tgaaaagttctttgtttcctattgct 20036596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 207
Target Start/End: Original strand, 20046040 - 20046212
Alignment:
Q  35 aaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgc 134  Q
    ||||||||||||| ||||| |||||||||| || |||  |||| ||||| ||| ||||  |  |||| || ||||||||| | |||||||||||||||      
T  20046040 aaatgagagaggtggaaaataaattgatccatgaaaggaagcagcttacaaataggaacgatggtcatgcttacacatcattatggatggatatgttcat 20046139  T
Q  135 tgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 207  Q
     ||||||||||||||||||||||| ||||| || ||| |||||||| |||||||||||||||| |||||||||    
T  20046140 cgataaaggtagtgaaattgaacacgaagccttccttactacttggttgtcaatttttgtttttcctcataaa 20046212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 116 - 246
Target Start/End: Original strand, 19858070 - 19858200
Alignment:
Q  116 tgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttc 215  Q
    ||||||||||||| |||   |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||| |      
T  19858070 tgtggatggatattttcatcgataaaggtagtgaaattgagcatgaagcatttcttgctacttggttgtcaatttttgtttttcctaatagatactttaa 19858169  T
Q  216 cgtgaaaagttgtttgtttccgattgctatt 246  Q
     |||||||| | ||||||||| |||||||||    
T  19858170 tgtgaaaagatctttgtttcctattgctatt 19858200  T

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Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 19812270 - 19812371
Alignment:
Q  108 cacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 207  Q
    ||||||||  |||||  |||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  19812270 cacatcaaaatggatcaatattttcgttggtaaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaa 19812369  T
Q  208 ta 209  Q
    ||    
T  19812370 ta 19812371  T

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Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 19853532 - 19853641
Alignment:
Q  138 taaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttccg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||| |   |||||||| | |||||||||     
T  19853532 taaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtctatttttgtttttcctcatagatactttattgtgaaaagatctttgtttcct 19853631  T
Q  238 attgctattc 247  Q
    ||||||||||    
T  19853632 attgctattc 19853641  T

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Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 19838384 - 19838526
Alignment:
Q  109 acatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaat 208  Q
    |||||| | ||||||||||| |||   ||||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||| || ||     
T  19838384 acatcactatggatggatattttcatcgataaaggtagcgaaattgaacatgaagcttttctagctacttggttgtcaatttttgtttttcctaatcaac 19838483  T
Q  209 actcttccgtgaaaagttgtttgtttccgattgctattcatct 251  Q
    |||||| ||||||||| | ||||||||| |||| | |||||||    
T  19838484 actcttgcgtgaaaagctttttgtttccaattgttgttcatct 19838526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 19943710 - 19943810
Alignment:
Q  108 cacatcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 207  Q
    ||||||| ||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||| ||||||| |    
T  19943710 cacatcagtgtggatggatattttcatcgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcaa--tttgtttttcctcataga 19943807  T
Q  208 tac 210  Q
    |||    
T  19943808 tac 19943810  T

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Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 30914660 - 30914764
Alignment:
Q  135 tgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgttt 234  Q
    |||||||| |||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||| ||| |   ||  |||||||||| |||||||    
T  30914660 tgataaagttagtgaaattgaacatgaagcattccttactacttggttgtcaatttttgttttccctcacaaaga---tttggtgaaaagttttttgttt 30914756  T
Q  235 ccgattgc 242  Q
    || |||||    
T  30914757 cctattgc 30914764  T

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Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 19951124 - 19951212
Alignment:
Q  118 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataa 206  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| || |||| ||||||| ||||| |||||||||| ||| ||||    
T  19951124 tggatggatattttcactgataaaggtagtgaaattgaacatgaagccttccttgttacttggttgtcactttttgtttttcctaataa 19951212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 19989522 - 19989599
Alignment:
Q  118 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgtt 195  Q
    ||||||||| | |||  ||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  19989522 tggatggatgttttcattgataaaggtaatgaacttgaacatgaagcatttcttgctacttggttgtcaatttttgtt 19989599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 26647022 - 26647134
Alignment:
Q  136 gataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttc 235  Q
    |||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||| |||||| ||||||  | |   ||  |||||||||||||||||||    
T  26647022 gataaaggtagtgaaattgaacatgaagcattcctttctacttggttgtcagtttatgtttttcctcatctaaa---tttggtgaaaagttgtttgtttc 26647118  T
Q  236 cgattgctattcatct 251  Q
    | |||||| |||||||    
T  26647119 ctattgctgttcatct 26647134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 19818577 - 19818645
Alignment:
Q  138 taaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataa 206  Q
    ||||||||  ||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||    
T  19818577 taaaggtaccgaaattgaacatgaagcttttcttgctacttggttatcaatttttgtttttcctcataa 19818645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 26646896 - 26646973
Alignment:
Q  4 gatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgcaagacagcaactt 81  Q
    |||||||||||||| ||||||||||||  | ||||||||||||| ||||| ||| | |||||||||||| ||||||||    
T  26646896 gatcctgttttcatttcacttgaagaccaagaaatgagagaggtggaaaagaaactcatccttgcaagagagcaactt 26646973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 26653174 - 26653239
Alignment:
Q  140 aaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcata 205  Q
    |||||||||||||||||||||| ||||| |||||  ||||| |||||||||||||||| |||||||    
T  26653174 aaggtagtgaaattgaacatgatgcattccttgcagcttggttgtcaatttttgtttttcctcata 26653239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 19989408 - 19989485
Alignment:
Q  4 gatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgcaagacagcaactt 81  Q
    ||||||||||||||  ||||| |||||  | |||||| |||||| |||||  |||||||||||| |||||||||||||    
T  19989408 gatcctgttttcattacacttcaagaccaagaaatgaaagaggtggaaaaggaattgatccttgaaagacagcaactt 19989485  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 19838301 - 19838351
Alignment:
Q  35 aaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttacta 85  Q
    ||||||||||||| |||||||||||||||||| ||  | ||||||||||||    
T  19838301 aaatgagagaggtggaaaacaaattgatccttacattaaagcaacttacta 19838351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 19971677 - 19971742
Alignment:
Q  184 tcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttccgattgctattcat 249  Q
    ||||||||||||||  |||||| ||||| |   |||||||||| ||||||||| ||||||||||||    
T  19971677 tcaatttttgttttttctcatagatactttatagtgaaaagttctttgtttcctattgctattcat 19971742  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 211
Target Start/End: Complemental strand, 22652320 - 22652113
Alignment:
Q  4 gatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacg 103  Q
    ||||||||||||||||||||||||||   ||| ||||||||||| ||||| ||  ||||||||||||||||   | || ||| |  ||||||| |||| |    
T  22652320 gatcctgttttcatctcacttgaagatgaaaagatgagagaggtggaaaagaagatgatccttgcaagacaaacaatttctactaagaaacaaagtcagg 22652221  T
Q  104 cgtaca-catcaatgtggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctc 202  Q
    | || | || || | ||||||||||| |||   ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||  |||    
T  22652220 c-tagagcaacattatggatggatattttcatcgataaaggtagtgaaattgaacatgaagcgttccttgctacttggttgtcaatttttgtttttgctc 22652122  T
Q  203 ataaatact 211  Q
    ||| |||||    
T  22652121 atagatact 22652113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 22685778 - 22685668
Alignment:
Q  138 taaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttccg 237  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||||| |||||||||     ||  ||||||| || | ||||||||    
T  22685778 taaaggtagtgaaattgagcatgaagcatttcttgctgcttggttgtcactttttgtttttcctcataaa---attttggtgaaaacttctatgtttccg 22685682  T
Q  238 attgctattcatct 251  Q
    ||||||||||||||    
T  22685681 attgctattcatct 22685668  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 22689755 - 22689684
Alignment:
Q  136 gataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 207  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  22689755 gataatggtaatgaatttgaacatgaagcatttcttgctacttggttgtcaatttttgtttttcctcataaa 22689684  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 11564232 - 11564163
Alignment:
Q  138 taaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 207  Q
    ||||| |||| |||||||||||||||||||  || || | ||||| || ||||||||||| |||||||||    
T  11564232 taaagctagtaaaattgaacatgaagcattcatttctgcatggctttccatttttgtttttcctcataaa 11564163  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 6397939 - 6397767
Alignment:
Q  35 aaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgc 134  Q
    ||||| || |||| ||||| ||||||||||| | |||| |||||||||| ||| ||||  || |||| || |||| |||| | |||||||||||||||      
T  6397939 aaatgtgataggtggaaaataaattgatcctagaaagaaagcaacttacaaataggaatgaaggtcatgcttacatatcattatggatggatatgttcat 6397840  T
Q  135 tgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 207  Q
     ||||||||||||||||||||||||||||| || |||||||| ||| ||||||||| || ||| |||| ||||    
T  6397839 cgataaaggtagtgaaattgaacatgaagccttccttgctacctggttgtcaatttgtgcttttcctcctaaa 6397767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 6398178 - 6398340
Alignment:
Q  35 aaatgagagaggtagaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgc 134  Q
    ||||||||||||| ||||||||||||||||| | |||| || ||||||| |||  |||  || ||| | | |||||||   | ||||||||||||||       
T  6398178 aaatgagagaggtggaaaacaaattgatcctagaaagaaagaaacttaccaatacgaataaaggtcccacttacacatagttatggatggatatgtttat 6398277  T
Q  135 tgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgtttt 197  Q
      |||||||||||||||||||||||||||| || ||||||| |||| ||| ||||||||||||    
T  6398278 ctataaaggtagtgaaattgaacatgaagccttccttgctaattggttgttaatttttgtttt 6398340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 1717214 - 1717303
Alignment:
Q  118 tggatggatatgttcgctgataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 207  Q
    ||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| |||||| |||||||||    
T  1717214 tggatggatgtttttgttgataaaggtagtgaaattgaacatgaagcatttcttgctacttggttgtcggtttatgtttttcctcataaa 1717303  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 9815058 - 9815167
Alignment:
Q  139 aaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttccga 238  Q
    ||||||||||||||||| |||||||| ||  ||||||| ||| ||||||| ||||||||  ||||||||   ||||  |||||||||| ||||||| | |    
T  9815058 aaaggtagtgaaattgagcatgaagcgttcattgctacgtggttgtcaatctttgttttaactcataaa---tctttggtgaaaagttctttgttttcta 9815154  T
Q  239 ttgctattcatct 251  Q
    |||||||||||||    
T  9815155 ttgctattcatct 9815167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 251
Target Start/End: Complemental strand, 26355027 - 26354912
Alignment:
Q  136 gataaaggtagtgaaattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaatactcttccgtgaaaagttgtttgtttc 235  Q
    ||||||||||||||| ||||||||||||||||  ||| | ||||| | |||||||||||||| |||   |||| |   |  |||||||||| ||||||||    
T  26355027 gataaaggtagtgaagttgaacatgaagcattcattgttgcttggttatcaatttttgtttttcctagaaaatgcatgttggtgaaaagttctttgtttc 26354928  T
Q  236 cgattgctattcatct 251  Q
    | ||||||||||||||    
T  26354927 ctattgctattcatct 26354912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 38435356 - 38435286
Alignment:
Q  4 gatcctgttttcatctcacttgaagacacaaaaatgagagaggtagaaaacaaattgatccttgcaagaca 74  Q
    ||||||||||||| | || ||||||||  | ||||||||||||| ||||| |||||||| |||||||||||    
T  38435356 gatcctgttttcaccacagttgaagaccaagaaatgagagaggtggaaaagaaattgatacttgcaagaca 38435286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 12581222 - 12581117
Alignment:
Q  48 agaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagt 147  Q
    ||||| |||||||||||||| |||| |||||||||| ||| ||||  || |||||   ||||||||| | |||||||||||||||   |||||||||| |    
T  12581222 agaaagcaaattgatccttgaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgttcaacgataaaggtaat 12581123  T
Q  148 gaaatt 153  Q
    ||||||    
T  12581122 gaaatt 12581117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 12581424 - 12581476
Alignment:
Q  150 aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctc 202  Q
    ||||||||||||||| || |||||||||||| |||||||||||||||| ||||    
T  12581424 aattgaacatgaagccttccttgctacttggttgtcaatttttgtttttcctc 12581476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 12497241 - 12497296
Alignment:
Q  150 aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcata 205  Q
    ||||||||||||||| || |||||||| ||| |||||||||||||||| |||||||    
T  12497241 aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcata 12497296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 12521106 - 12521161
Alignment:
Q  150 aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcata 205  Q
    ||||||||||||||| || |||||||| ||| |||||||||||||||| |||||||    
T  12521106 aattgaacatgaagccttccttgctacctggttgtcaatttttgtttttcctcata 12521161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 12497039 - 12496933
Alignment:
Q  48 agaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagt 147  Q
    ||||| |||| ||||||||  |||| |||||||||| ||| ||||  || |||||   ||||||||| | |||||||||||||||   |||||||||| |    
T  12497039 agaaagcaaactgatccttcaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgttcaacgataaaggtaat 12496940  T
Q  148 gaaattg 154  Q
    |||||||    
T  12496939 gaaattg 12496933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 12520904 - 12520798
Alignment:
Q  48 agaaaacaaattgatccttgcaagacagcaacttactaatcggaaacaacgtcacgcgtacacatcaatgtggatggatatgttcgctgataaaggtagt 147  Q
    ||||| |||| ||||||||  |||| |||||||||| ||| ||||  || |||||   ||||||||| | |||||||||||||||   |||||||||| |    
T  12520904 agaaagcaaactgatccttcaaagaaagcaacttacaaataggaatgaaggtcacaattacacatcattatggatggatatgttcaacgataaaggtaat 12520805  T
Q  148 gaaattg 154  Q
    |||||||    
T  12520804 gaaattg 12520798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 12519878 - 12519821
Alignment:
Q  150 aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 207  Q
    ||||||||||||||| || |||   |||||| |||||||||||||||| |||||||||    
T  12519878 aattgaacatgaagccttccttttaacttggttgtcaatttttgtttttcctcataaa 12519821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 12580167 - 12580110
Alignment:
Q  150 aattgaacatgaagcatttcttgctacttggctgtcaatttttgttttccctcataaa 207  Q
    |||||||||||| || || |||  ||||||| |||||||||||||||| |||||||||    
T  12580167 aattgaacatgaggccttcctttttacttggttgtcaatttttgtttttcctcataaa 12580110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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