View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_low_4 (Length: 620)
Name: NF11402_low_4
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 609
Target Start/End: Complemental strand, 39529775 - 39529167
Alignment:
| Q |
1 |
atagaagtgtactattgttgttttgatcatgtagttttgcctatttagtgaatgttttattgtgcagtaagaaaaaggatggaaaatttgcaatgatttc |
100 |
Q |
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| T |
39529775 |
atagaagagtactattgttgttttgatcatgtagttttgcctatttagtgaatgttttattgtgcattaagaaaaaggatggaaaatttgcaatgatttc |
39529676 |
T |
|
| Q |
101 |
acaggcgtgtttaaaatacatgattaggacttgattaggaattaggaggatcagaggatattttattctacattgtctctggagtcttatgaacagaggg |
200 |
Q |
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| T |
39529675 |
acaggcgtgtttaaaatacatgattaggacttgattaggaattaggaggatcagaggatattttattctacattgtctctggagtattatgaacagaggg |
39529576 |
T |
|
| Q |
201 |
aatagatctaaatttaaggtgtaataataatatgttgattttgattcggtgcgaaattgtttcgattaggaattaaactagctgattgtaaattcattct |
300 |
Q |
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| T |
39529575 |
aatagatctaaatttaaggtgtaataataatatgttgattttgattcggtgcgaaattgtttcgattaggaattaaactagctgattgtaaattcattct |
39529476 |
T |
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| Q |
301 |
cactttactcatgcgctgaccatatcttcatgtttacgttggtgaagtgctagagtgagaagaagagcttttattagcaattgtaggaattattttcaag |
400 |
Q |
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| T |
39529475 |
cgctttactcatgcgctgaccatatcttcatgtttacgttggtgaagtgctagagtgagaagaagagcttttattagcaattgtaggaattattttcaag |
39529376 |
T |
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| Q |
401 |
ggatcatatttatgacatttttgccatttttgtcgatgaagcacaaacaagatatgagtatcggatgcgatacgttaaggatgcttagtttgtaatgctc |
500 |
Q |
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| T |
39529375 |
ggatcatatttatgacatttttgccatttttgtcgacgaagcacaaacaagatatgagtatcggatgcgatacgttaaggatacttagtttgtaatgctc |
39529276 |
T |
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| Q |
501 |
cttgtttatgtctgttaccaacttatcatgcaaggttacttaaaatagaaatatatcttctttgtcatgttgtttcggtttcaacttttgcattttcttt |
600 |
Q |
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| T |
39529275 |
cttgtttatgtctgttaccaacttatcatgcaaggttacttaaaatagaaacatatcttctttgccatgttgtttaggtttcaacttttgcattttcttt |
39529176 |
T |
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| Q |
601 |
tcccccttt |
609 |
Q |
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| T |
39529175 |
tcccccttt |
39529167 |
T |
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