View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11402_low_41 (Length: 244)

Name: NF11402_low_41
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11402_low_41
NF11402_low_41
[»] chr1 (7 HSPs)
chr1 (17-225)||(33160954-33161165)
chr1 (17-114)||(29691023-29691120)
chr1 (17-114)||(29718535-29718632)
chr1 (8-59)||(19468115-19468166)
chr1 (195-225)||(30827735-30827765)
chr1 (17-114)||(29658508-29658605)
chr1 (17-114)||(30827545-30827642)
[»] chr4 (4 HSPs)
chr4 (119-225)||(10633968-10634072)
chr4 (8-58)||(55908336-55908386)
chr4 (8-84)||(1600842-1600918)
chr4 (15-56)||(53761398-53761439)
[»] chr2 (1 HSPs)
chr2 (8-58)||(1037272-1037322)
[»] chr5 (1 HSPs)
chr5 (182-225)||(17205657-17205700)
[»] chr6 (4 HSPs)
chr6 (172-225)||(6432747-6432800)
chr6 (9-58)||(7993793-7993842)
chr6 (195-225)||(6436848-6436878)
chr6 (15-60)||(8913678-8913723)
[»] scaffold0262 (1 HSPs)
scaffold0262 (8-58)||(358-408)


Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 33160954 - 33161165
Alignment:
Q  17 taaggtttatagacaccagatcaacaagaagcaaagacaacttggccacttgtcgatctttcaaaaaacaagtgtgcctaagatccaaatgttgtata-- 114  Q
    |||||||||||||||||| | || |||||| |||||| |||| ||| || ||| |||| |||| |||| |||||||  | |||||||||| |||||||      
T  33160954 taaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgttgatcattcagaaaataagtgtgatttagatccaaatattgtatata 33161053  T
Q  115 -cgtaacttagataagagatagtgaattccatcaacgaagtcagtgggtctgtcgagcaaagggtggccaagattgagtaatttgagcaaagggaaacaa 213  Q
      |  | || ||||||||| |||||| ||||| || ||||| |||| |  ||| || |  |||||| || || ||||||  |||||||||||||||||||    
T  33161054 ttgacagttggataagagagagtgaaatccattaatgaagttagtgtgattgttgaactgagggtgaccgaggttgagttttttgagcaaagggaaacaa 33161153  T
Q  214 tcggcaatgagt 225  Q
    ||||||| ||||    
T  33161154 tcggcaacgagt 33161165  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 29691120 - 29691023
Alignment:
Q  17 taaggtttatagacaccagatcaacaagaagcaaagacaacttggccacttgtcgatctttcaaaaaacaagtgtgcctaagatccaaatgttgtata 114  Q
    |||||||||||||||||| || | |||||| |||||| |||| ||| || ||| |||| || | ||||  |||||| |||||||||||||||||||||    
T  29691120 taaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtata 29691023  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 29718632 - 29718535
Alignment:
Q  17 taaggtttatagacaccagatcaacaagaagcaaagacaacttggccacttgtcgatctttcaaaaaacaagtgtgcctaagatccaaatgttgtata 114  Q
    |||||||||||||||||| || | |||||| |||||| |||| ||| || ||| |||| || | ||||  |||||| |||||||||||||||||||||    
T  29718632 taaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaaattagtgtgactaagatccaaatgttgtata 29718535  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 19468166 - 19468115
Alignment:
Q  8 tacattcactaaggtttatagacaccagatcaacaagaagcaaagacaactt 59  Q
    ||||||||||||||||||||||||| | |||| |||||| ||||||||||||    
T  19468166 tacattcactaaggtttatagacactaaatcaccaagaaacaaagacaactt 19468115  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 225
Target Start/End: Original strand, 30827735 - 30827765
Alignment:
Q  195 tttgagcaaagggaaacaatcggcaatgagt 225  Q
    |||||||||||||||||||||||||||||||    
T  30827735 tttgagcaaagggaaacaatcggcaatgagt 30827765  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 29658605 - 29658508
Alignment:
Q  17 taaggtttatagacaccagatcaacaagaagcaaagacaacttggccacttgtcgatctttcaaaaaacaagtgtgcctaagatccaaatgttgtata 114  Q
    |||||||||||||||||| || | |||||| |||||| |||| ||| || ||| |||| || | |||   |||| | |||||||||||||||||||||    
T  29658605 taaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgagaaacttagtgcgactaagatccaaatgttgtata 29658508  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 30827545 - 30827642
Alignment:
Q  17 taaggtttatagacaccagatcaacaagaagcaaagacaacttggccacttgtcgatctttcaaaaaacaagtgtgcctaagatccaaatgttgtata 114  Q
    |||||||||||||||| | || |  |||||||||||| || | ||| || ||| |||| || | ||||||||||   |||||||||||||||||||||    
T  30827545 taaggtttatagacactaaatgaggaagaagcaaagagaagtcggcaacatgttgatcattgagaaaacaagtgaaactaagatccaaatgttgtata 30827642  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 10634072 - 10633968
Alignment:
Q  119 acttagataagagatagtgaattccatcaacgaagtcagtgggtctgtcgagcaaagggtggccaagattgagtaatttgagcaaagggaaacaatcggc 218  Q
    ||||| |||||||| |||||||||||| || ||| | || ||| || | || ||||||||| ||||||  ||||  ||||||||||||||||||||||||    
T  10634072 acttaaataagagagagtgaattccataaaagaaattagagggcctcttgatcaaagggtgaccaaga--gagttctttgagcaaagggaaacaatcggc 10633975  T
Q  219 aatgagt 225  Q
    |||||||    
T  10633974 aatgagt 10633968  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 55908386 - 55908336
Alignment:
Q  8 tacattcactaaggtttatagacaccagatcaacaagaagcaaagacaact 58  Q
    ||||||||||||||||||||||||||| |||| |||||| |||||||||||    
T  55908386 tacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaact 55908336  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 1600842 - 1600918
Alignment:
Q  8 tacattcactaaggtttatagacaccagatcaacaagaagcaaagacaacttggccacttgtcgatctttcaaaaaa 84  Q
    |||||||||||||||||||||| |||| |||| |||||| | ||| ||||  ||| || || |||||||||||||||    
T  1600842 tacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacaaggcaacatggcgatctttcaaaaaa 1600918  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 53761439 - 53761398
Alignment:
Q  15 actaaggtttatagacaccagatcaacaagaagcaaagacaa 56  Q
    |||||||||||| ||||||| |||| ||||||||||||||||    
T  53761439 actaaggtttatggacaccaaatcaccaagaagcaaagacaa 53761398  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 1037322 - 1037272
Alignment:
Q  8 tacattcactaaggtttatagacaccagatcaacaagaagcaaagacaact 58  Q
    ||||||||||||||||||||||||||| |||| |||||| |||||||||||    
T  1037322 tacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaact 1037272  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 17205657 - 17205700
Alignment:
Q  182 caagattgagtaatttgagcaaagggaaacaatcggcaatgagt 225  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  17205657 caagattgagttctttgagcaaagggaaacaatcggcaatgagt 17205700  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 6432747 - 6432800
Alignment:
Q  172 aaagggtggccaagattgagtaatttgagcaaagggaaacaatcggcaatgagt 225  Q
    |||| ||| ||||| ||||||  |||||||||||||||||||||||||||||||    
T  6432747 aaagtgtgaccaaggttgagttgtttgagcaaagggaaacaatcggcaatgagt 6432800  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 7993842 - 7993793
Alignment:
Q  9 acattcactaaggtttatagacaccagatcaacaagaagcaaagacaact 58  Q
    |||||||||||||||||||||||||| |||| ||||||| || |||||||    
T  7993842 acattcactaaggtttatagacaccaaatcaccaagaagtaatgacaact 7993793  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 225
Target Start/End: Original strand, 6436848 - 6436878
Alignment:
Q  195 tttgagcaaagggaaacaatcggcaatgagt 225  Q
    |||||||||||||||||||||||||||||||    
T  6436848 tttgagcaaagggaaacaatcggcaatgagt 6436878  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 8913723 - 8913678
Alignment:
Q  15 actaaggtttatagacaccagatcaacaagaagcaaagacaacttg 60  Q
    |||||||||||||||||||| || | |||||| |||||||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagacaacttg 8913678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 358 - 408
Alignment:
Q  8 tacattcactaaggtttatagacaccagatcaacaagaagcaaagacaact 58  Q
    ||||||||||||| ||||||||||||| |||  |||||| |||||||||||    
T  358 tacattcactaagatttatagacaccaaatcgccaagaaacaaagacaact 408  T

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