View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11402_low_46 (Length: 220)
Name: NF11402_low_46
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11402_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 32414052 - 32413859
Alignment:
| Q |
1 |
cgttacaatcaagaagaatcctgctggctattcccagttccacctttaaatcctcctttgaaatctgaattcaccatatttccaacttggagaaatcctt |
100 |
Q |
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| T |
32414052 |
cgttacaatcaagaagaatcctgctggctattcccagttcc------------tcctttgaaatctgaattcaccatattcccaacttggagaaatcctt |
32413965 |
T |
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| Q |
101 |
acttttagtattaccatcaatgtcttctcactcacaacgatggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttct |
200 |
Q |
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| T |
32413964 |
acttttagtattaccatcaatgtcttctcactcacaacgatggatatacaaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttct |
32413865 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 3395235 - 3395163
Alignment:
| Q |
140 |
atggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctctctgct |
212 |
Q |
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| T |
3395235 |
atggatacacgacgtgttcatcaattttagagggaaagatactcgcaagacttttgtttctcatctctatgct |
3395163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 3309581 - 3309648
Alignment:
| Q |
140 |
atggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctct |
207 |
Q |
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| T |
3309581 |
atggttatacgacgtgttcatcaatttcaggggaaaagacactcgcaacaattttgtttctcatctct |
3309648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 15775342 - 15775407
Alignment:
| Q |
140 |
atggatatacgaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatct |
205 |
Q |
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| T |
15775342 |
atggatctacgaagtgttcataaattttaggggggaagatactcgtagcaatttcgtttctcatct |
15775407 |
T |
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