View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11402_low_5 (Length: 615)

Name: NF11402_low_5
Description: NF11402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11402_low_5
NF11402_low_5
[»] chr7 (4 HSPs)
chr7 (116-596)||(5375741-5376228)
chr7 (159-529)||(5368451-5368810)
chr7 (25-160)||(5368284-5368419)
chr7 (227-279)||(5403591-5403643)
[»] chr1 (1 HSPs)
chr1 (229-274)||(12766353-12766398)


Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 116 - 596
Target Start/End: Complemental strand, 5376228 - 5375741
Alignment:
Q  116 catgcatatattgccaccaccaagactgacaatagtcgttttatccagaggaggaa---attgggctcc-ttctttcttgaggttccttgtaaactagaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||     |   |||||||||| |||||| |||||||||||||||||||||||    
T  5376228 catgcatatattgccaccaccaagactgacaatagtcgttttatcc-gagtcttcatctattgggctcccttcttttttgaggttccttgtaaactagaa 5376130  T
Q  212 gacatgggattcatcgagtcattttcttgtctaagaacaagaatattagttattggtcctgcaacatttgaaagattggcattaaacaacgtaaagaatg 311  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5376129 gacatgggattactcgagtcattttcttgtctaagaacaagaatattagttattggtcctgcaacatttgaaagattggcattaaacaacgcaaagaatg 5376030  T
Q  312 catgcttgagcatactcagtattgtaa----acaaagtgattgatatcgtgtccagaaggtgatatgagatatgagcatgtgggttcggatacaaacgca 407  Q
    |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5376029 catgcttgagcatactcagtattgtaattaaacaaagtgattgatatcgtgtccagaaggtgatatgagatatgagcatgtgggttcggatacaaatgca 5375930  T
Q  408 aatttcatgcatttatataatcatctagagtatattaaaaagaaaaattaagtatccttgttaaagggaaacaacaaattactccaagtacaaccagtca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5375929 aatttcatgcatttatataatcatctagagtatattaaaaagaaaaattaagtatccttgttaaagggaaacaacaaattactccaagtacaatcagtca 5375830  T
Q  508 aacggtgtgaatgaggtatacactagcagtagcagtagaagtattaacaagagttgaatatatgatgaatacactgtcagtgccaactg 596  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5375829 aacggtgtgaatgaggtatacactagcagtagcagtagaagtattaacaagagttgaatatatgatgaatacactgtcagtgccaactg 5375741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 159 - 529
Target Start/End: Original strand, 5368451 - 5368810
Alignment:
Q  159 tccagaggaggaaattgggctcc-ttctttcttgaggttccttgtaaactagaagacatgggattcatcgagtcattttcttgtctaagaacaagaatat 257  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||| |||| |||||||||||  || ||||||||||||||||||||||||||||||    
T  5368451 tccagaggaggaaattgagctcccttcttttttgaggttccttgtaaattagaggacatgggattactcaagtcattttcttgtctaagaacaagaatat 5368550  T
Q  258 tagttattggtcctgcaacatttgaaagattggcattaaacaacgtaaagaatgcatgcttgagcatactcagtattgtaaacaaagtgattgatatcgt 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||| ||||||||||||||||||||     
T  5368551 tagttattggtcctgcaacatttgaaagattggcattaaacaacgtaaagaatgcat---------------atattgaaaacaaagtgattgatatcgc 5368635  T
Q  358 gtccagaaggtgatatgagatatgagcatgtg--ggttcgg---atacaaacgcaaatttcatgcatttatataatcatctagagtatattaaaaagaaa 452  Q
    |||| ||| |||  |||| |||||||||| ||  ||||| |   ||| |||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  5368636 gtcctgaatgtg--atgacatatgagcatatgcaggttcagcatataaaaacacaaattacatgcatttatataatcatctagagtatattgaaaagaaa 5368733  T
Q  453 aattaagtatccttgttaaagggaaacaacaaattactccaagtacaaccagtcaaacggtgtgaatgaggtataca 529  Q
    |||| |||||||| || |||||||||   ||||||||||  ||||  |||||||||| |||||||||||||||||||    
T  5368734 aattgagtatcctcgtcaaagggaaatggcaaattactcatagtaacaccagtcaaatggtgtgaatgaggtataca 5368810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 5368284 - 5368419
Alignment:
Q  25 aaatattaaagacacctaatcatgaatagagacaaacctgaagttctttactgtaactagaaatgagttgagaactaaggtatgaaacatccatgcatat 124  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  5368284 aaatattaaaggaacctaatcatcaatagagacaaacctgaagttctttactgtaactagaaatcacttgagaactaaggtatgaaacatccatgcatat 5368383  T
Q  125 attgccaccaccaagactgacaatagtcgttttatc 160  Q
    ||||||||||||||||||||||||||||||||||||    
T  5368384 attgccaccaccaagactgacaatagtcgttttatc 5368419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 5403643 - 5403591
Alignment:
Q  227 gagtcattttcttgtctaagaacaagaatattagttattggtcctgcaacatt 279  Q
    |||||| |||||||||||||||| | || |||||||||| |||||||||||||    
T  5403643 gagtcactttcttgtctaagaacgaaaacattagttattcgtcctgcaacatt 5403591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 12766398 - 12766353
Alignment:
Q  229 gtcattttcttgtctaagaacaagaatattagttattggtcctgca 274  Q
    |||| |||||||||||| ||||| |||||||||||| |||||||||    
T  12766398 gtcaatttcttgtctaacaacaataatattagttataggtcctgca 12766353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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