View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11403_high_3 (Length: 370)
Name: NF11403_high_3
Description: NF11403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11403_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 2913020 - 2913363
Alignment:
| Q |
11 |
cacagaagtaattcagccatacagtaataacaaaggtgtctctgatcatggttacaaaccacttagaagataacaaaattaagagaacaagaaaacttaa |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2913020 |
cacagaagtaattcagccatacagtaataacaaaggtgtct--gatcatggttacaaaccacttagaagataaaaaaattaagagaacaagaaaacttaa |
2913117 |
T |
|
| Q |
111 |
aacataggccgtaaagtcatgcagaacttaggaactcctcatcctcataaaaaatctgtaaattcttggactacatcagaaattcagtttcttcattctt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2913118 |
aacataggccgtaaagtcatgcagaacttaggaactcctcatcctcataaaaaatctgtaaattcttggactacatcagaaattcagtttcttcattctt |
2913217 |
T |
|
| Q |
211 |
gagtttcagcacaaaacctcaatgtgatcagttaatcatgattatcgcacaacagaagcaaatcatcggtccatgatatttaccacctgtccaaaagtcg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2913218 |
gagtttcagcacaaaacctcaatgtgatcagttaatcatgattatcgcacaacagaagcaaatcatcggtccatgatatttaccacctgtccaaaagtcg |
2913317 |
T |
|
| Q |
311 |
caaatgaaaataatattacactctaaccatcttcatacatctaaag |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2913318 |
caaatgaaaataatattacactctaaccatcttcatacatctaaag |
2913363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 2919224 - 2919333
Alignment:
| Q |
133 |
agaacttaggaactcctcatcctcataaaaaatctgtaaattcttggactacatcagaaattcagtttcttcattcttgagtttcagcacaaaacctcaa |
232 |
Q |
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|||||| ||||||| |||||||||| | |||||||||||||||||||||| ||| ||||||||| | ||||||||||||| |||||||| |||||| ||| |
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| T |
2919224 |
agaactgaggaacttctcatcctcaaagaaaatctgtaaattcttggactccatgagaaattcaatatcttcattcttgaatttcagcataaaacc-caa |
2919322 |
T |
|
| Q |
233 |
tgtgatcagtt |
243 |
Q |
| |
|
||||||||||| |
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|
| T |
2919323 |
tgtgatcagtt |
2919333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 37794093 - 37794201
Alignment:
| Q |
131 |
gcagaacttaggaactcctcatcctcataaaaaatctgtaaattcttggactacatcagaaattcagtttcttcattcttgagtttcagcacaaaacctc |
230 |
Q |
| |
|
|||||||| |||| || |||||| || | |||||||| | || ||||| | ||||||||||||| | ||||||||||||| ||||||||||||||| | |
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| T |
37794093 |
gcagaactgaggagcttctcatcttcccagaaaatctgcatgtttttggattccatcagaaattcaatatcttcattcttgaatttcagcacaaaacc-c |
37794191 |
T |
|
| Q |
231 |
aatgtgatca |
240 |
Q |
| |
|
|||||||||| |
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|
| T |
37794192 |
aatgtgatca |
37794201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 3014058 - 3013947
Alignment:
| Q |
131 |
gcagaacttaggaactcctcatcctcataaaaaatctgtaaattcttggactacatcagaaattcagtttcttcattcttgagtttcagcacaaaacctc |
230 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||| | ||||||||| | ||| ||||| ||| ||||||||||||||| ||||| ||||||||| | |
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|
| T |
3014058 |
gcagaactgagaaactcctcatcctcaaggtcaatctgaagattcttggattccattagaaaatcaatttcttcattcttgaatttcatcacaaaacc-c |
3013960 |
T |
|
| Q |
231 |
aatgtgatcagtt |
243 |
Q |
| |
|
|||||||| |||| |
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|
| T |
3013959 |
aatgtgattagtt |
3013947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 2919106 - 2919157
Alignment:
| Q |
64 |
acaaaccacttagaagataacaaaattaagagaacaagaaaacttaaaacat |
115 |
Q |
| |
|
|||||||||| | | ||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
2919106 |
acaaaccactgaaatgataataaaatgaagagaacaagaaaacttaaaacat |
2919157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 2945366 - 2945476
Alignment:
| Q |
132 |
cagaacttaggaactcctcatcctcataaaaaatctgtaaattcttggactacatcagaaattcagtttcttcattcttgagtttcagcacaaaacctca |
231 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||| |||||||| || | ||| ||||| ||| ||||||||||||||| ||||| |||| |||| || |
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| T |
2945366 |
cagaactgaggaactcctcatctgcatgttcaatctgcaaattcttcgattccatgagaaaatcaatttcttcattcttgaatttcatcacataacc-ca |
2945464 |
T |
|
| Q |
232 |
atgtgatcagtt |
243 |
Q |
| |
|
||||||| |||| |
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|
| T |
2945465 |
atgtgattagtt |
2945476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 2928724 - 2928818
Alignment:
| Q |
131 |
gcagaacttaggaactcctcatcctcataaaaaatctgtaaattcttggactacatcagaaattcagtttcttcattcttgagtttcagcacaaa |
225 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| | ||||||||| | ||| ||||| ||| ||||||||||||| | |||||| ||||| |
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| T |
2928724 |
gcagaactgaggaactcctcatcctcaaggtcaatctgaagattcttggattccattagaaaatcaatttcttcattcttaaatttcagaacaaa |
2928818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 28023104 - 28023214
Alignment:
| Q |
129 |
atgcagaacttaggaactcctcatcctcataaaaaatctgtaaattcttggactacatcagaaattcagtttcttcattcttgagtttcagcacaaaacc |
228 |
Q |
| |
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|||||||||| |||| || |||||||||| | ||||||||||| || ||||| | |||||| |||||| | ||||||||||||| ||||||||||||||| |
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| T |
28023104 |
atgcagaactgaggagcttctcatcctcacagaaaatctgtaagttgttggattccatcaggaattcaatatcttcattcttgaatttcagcacaaaacc |
28023203 |
T |
|
| Q |
229 |
tcaatgtgatca |
240 |
Q |
| |
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||||||||||| |
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|
| T |
28023204 |
-caatgtgatca |
28023214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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