View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11403_low_1 (Length: 694)
Name: NF11403_low_1
Description: NF11403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11403_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 329 - 678
Target Start/End: Original strand, 35106739 - 35107083
Alignment:
| Q |
329 |
taacagtaacatgtacactattgcttatgtagtggtacgcgttacataaaaactgaaaaattcatccaatgtaaattttccaatttagacctatagttag |
428 |
Q |
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| T |
35106739 |
taacagtaacatatacactat-gcttatgtagtggtacacgttactttaaaactgaaaaattcatccaatgtaaattttccaatttagacctatagttag |
35106837 |
T |
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| Q |
429 |
gaatgagtgacatcagtctttgacaaaaactaatcctttaagcctttacattcacattttaggaatgtagactagtttatttacaaagttctaaagttat |
528 |
Q |
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| T |
35106838 |
gaatgagtgacatcattctttgacaaaaactaatcctttatgcctttacattcacattttaggaatgtaaactagtttatttacaaagttctaaagttat |
35106937 |
T |
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| Q |
529 |
ttaattaatcatactattcaacattttttgttggccaaagtttcttccactttgtaatctcctccttgctatgcaactttctgattcccccataaaaacc |
628 |
Q |
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| T |
35106938 |
----ttaatcatgctattcaacattttttgttggccaaagtttcttccactttgtaatctcctccttgctatgcaactttctgattcccccataaaaacc |
35107033 |
T |
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| Q |
629 |
ttctatttcatttccttgttctctatgattttttctgtttatcattgttt |
678 |
Q |
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| T |
35107034 |
ttctatttcatttccttgttctctatgattttttctgtttatcattgttt |
35107083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 88 - 245
Target Start/End: Original strand, 35106545 - 35106697
Alignment:
| Q |
88 |
ctggtgaagttttcaaagcattgttttgtttgttcagcctaaca-gacataaatatcttggtcatattagatgaaaaaaggtgacgatgactttaattaa |
186 |
Q |
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| T |
35106545 |
ctggtgaagttttcaaagcattgttttgtttgttcagcctaacaagacagaagcatcttggtcctatatgattaaaa--ggtgatgatgactttaa---- |
35106638 |
T |
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| Q |
187 |
tttataagcacaagtgtgaactgaatagccaatttccctcaccacttagcattgtcttg |
245 |
Q |
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| T |
35106639 |
tttataagcacaagtgtgaactgaatagccaatttccctcaccacttagcattgtcttg |
35106697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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