View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11403_low_2 (Length: 502)

Name: NF11403_low_2
Description: NF11403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11403_low_2
NF11403_low_2
[»] chr2 (5 HSPs)
chr2 (1-488)||(40856848-40857334)
chr2 (210-484)||(18744371-18744644)
chr2 (320-484)||(9684877-9685041)
chr2 (310-442)||(17345161-17345292)
chr2 (334-418)||(8588632-8588716)
[»] chr5 (3 HSPs)
chr5 (207-493)||(15291373-15291658)
chr5 (141-233)||(26008570-26008660)
chr5 (334-493)||(27337165-27337324)
[»] chr8 (3 HSPs)
chr8 (210-417)||(37517636-37517843)
chr8 (185-260)||(4700344-4700419)
chr8 (247-395)||(40840123-40840270)
[»] chr4 (1 HSPs)
chr4 (209-420)||(53171042-53171253)
[»] chr1 (3 HSPs)
chr1 (210-425)||(28040481-28040695)
chr1 (187-260)||(7435050-7435123)
chr1 (310-484)||(19035908-19036081)
[»] chr6 (3 HSPs)
chr6 (424-484)||(26225238-26225298)
chr6 (334-420)||(7200049-7200136)
chr6 (334-442)||(29337562-29337670)
[»] chr7 (1 HSPs)
chr7 (334-439)||(47679647-47679752)
[»] chr3 (2 HSPs)
chr3 (210-300)||(29862465-29862555)
chr3 (334-442)||(49018475-49018583)


Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 40857334 - 40856848
Alignment:
Q  1 ttgtgattggtagaggtccttttttcgatgaccttcaatgaaggatggcttcgatctatttattagagttgggatttggtttgtactcggcggtataaca 100  Q
    |||||||||||||||||||||| || || ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40857334 ttgtgattggtagaggtcctttctttgaggaccttcaatgcaggatggcttcgatctgtttattagagttgggatttggtttgtactcggcggtataaca 40857235  T
Q  101 ggtttcctcatgcacttctatggcttccaagatggaatattgggtgctacaagatcatatataccgagagagaatgcgataagagtatggactcttattt 200  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  40857234 ggtttcctcgtacacttctatggcttccaagatggaatattgggtgctacaagatcatatataccgagagagaatgcgataagtgtatggactctcattt 40857135  T
Q  201 tgactgtgttttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttg 300  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40857134 tgactgtgttttggatggtcttcgtggtacaattttagattttaattttaacagttttacaaacaagaatatcatccctactaaagtccaacttgttttg 40857035  T
Q  301 acacatgtcctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcagacatg 400  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40857034 acacatgtcctttttagt-aaaagtgtttaggatatgaaagtaaagtttaacatgaccaccagacagaaaatcgtttttgcgtgtttgcaagcagacatg 40856936  T
Q  401 ttcatgattttcttctagctgtcccttattgatgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatattgtc 488  Q
     ||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40856935 ctcatgattttcttctagctatcccctattgatgagttaggttgaaaaatgccacaagtacaataccgtactatccttagatattgtc 40856848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 484
Target Start/End: Original strand, 18744371 - 18744644
Alignment:
Q  210 tttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttgacacatgtc 309  Q
    |||||||||||||||||| ||||||  ||||||| || ||||||||||||| | |||  ||| | || || ||||||  |||| ||||||| |   ||      
T  18744371 tttggatggtcttcgtggtacaattccagattttgatgttagcagttttactagcaaagacaccgtctctcctaaagcacaacatgttttggcgagtgct 18744470  T
Q  310 ctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagca-gacatgttcatgat 408  Q
    ||||||||| ||||||||| ||  |||| |||| |||||| | |||||||| ||||||||   | ||||||  ||||||||||||  | ||| ||| ||     
T  18744471 ctttttagt-aaaagtgttcaggatatggaagttaagtttgagatgaccacgagacagaaggcaatttttggatgtttgcaagcaccaaatgctcaagaa 18744569  T
Q  409 tttcttctagctgtcccttattgatgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatat 484  Q
    |||||||||||| ||||  ||||||| |||||||||  | ||| ||| |||  | || ||||||||||||||||||    
T  18744570 tttcttctagctatccc-gattgatgggttaggttagcatatgtcaccagtggagtatcgtactatccttagatat 18744644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 484
Target Start/End: Original strand, 9684877 - 9685041
Alignment:
Q  320 aaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgattttcttctag 418  Q
    ||||||||| ||  |||| |||| |||||| |||||||||| ||||||||   | ||||||  ||||||||||||| ||||  ||| |||||||||||||    
T  9684877 aaaagtgttcaggatatggaagttaagtttgacatgaccacgagacagaaggcaatttttggatgtttgcaagcagcacatactcaagattttcttctag 9684976  T
Q  419 ctgtcccttattgatgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatat 484  Q
    || |||| |||||||| ||||||| |  | ||| ||| |||  | || ||||||||||||||||||    
T  9684977 ctatccc-tattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatat 9685041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 442
Target Start/End: Complemental strand, 17345292 - 17345161
Alignment:
Q  310 ctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagca-gacatgttcatgat 408  Q
    ||||||||||||| ||||| ||  |||| |||| |||||| |||||||||||||||| || | | ||||||  |||||||||| |  ||||| ||| |||    
T  17345292 ctttttagtaaaa-gtgttcagcatatggaagttaagtttgacatgaccaccagacaaaagacaatttttggatgtttgcaagaaccacatgctcaagat 17345194  T
Q  409 tttcttctagctgtcccttattgatgagttaggt 442  Q
    |||||||||||| ||||  ||||||| |||||||    
T  17345193 tttcttctagctatccc-aattgatgggttaggt 17345161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 418
Target Start/End: Complemental strand, 8588716 - 8588632
Alignment:
Q  334 tatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcagacatgttcatgattttcttctag 418  Q
    |||| |||| |||||| |||||||||| | ||| || |||||||| | || |||||||||   |||| |||||||||||||||||    
T  8588716 tatggaagtcaagtttgacatgaccactaaacataagatagttttagagtttttgcaagcgtccatgctcatgattttcttctag 8588632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 493
Target Start/End: Original strand, 15291373 - 15291658
Alignment:
Q  207 tgttttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttgacacat 306  Q
    ||||||||||||||||||||| ||||||||||||||| |  ||||||||||||| | |||  ||| | ||||| ||||||   ||| |||||||||   |    
T  15291373 tgttttggatggtcttcgtggtacaattttagattttgacgttagcagttttactagcaaagacaccgtccctcctaaagcggaacatgttttgacgagt 15291472  T
Q  307 gtcctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcat 405  Q
    |  ||||||||| ||||||||| |   |||| |||| |||||| |||||||||| ||||||||   | |||| |  ||||||||||||| ||||| ||      
T  15291473 gctctttttagt-aaaagtgttcaagatatggaagttaagtttgacatgaccacgagacagaaggcaattttgggatgtttgcaagcagcacatgctcgg 15291571  T
Q  406 gattttcttctagctgtcccttattgatgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatattgtcctatg 493  Q
    ||||||||||||||| ||||  ||||||| ||||||| |  | ||| ||| |||  | || |||||||||||||||||| ||| ||||    
T  15291572 gattttcttctagctatccc-aattgatgggttaggtcagcatatgtcaccagtggagtatcgtactatccttagatatcgtcgtatg 15291658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 26008570 - 26008660
Alignment:
Q  141 tgggtgctacaagatcatatataccgagagagaatgcgataagagtatggactcttattttgactgtgttttggatggtcttcgtggcacaat 233  Q
    |||||||||||||| |||||||    ||||| ||||||||||| ||||||||||| |||||| | ||| ||| |||||||||| ||| |||||    
T  26008570 tgggtgctacaagaacatatatta--agagacaatgcgataagtgtatggactctgattttggcagtgctttagatggtcttcttggtacaat 26008660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 493
Target Start/End: Complemental strand, 27337324 - 27337165
Alignment:
Q  334 tatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgattttcttctagctgtcccttattga 432  Q
    |||| |||| |||||| |||||||||| ||||||||   |||||| |  ||||||||| ||  ||||| ||| ||||||||| ||||| ||||  |||||    
T  27337324 tatggaagttaagtttgacatgaccactagacagaaggcagttttgggatgtttgcaaccaccacatgctcaagattttcttttagctatccca-attga 27337226  T
Q  433 tgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatattgtcctatg 493  Q
    || |||||||||  | ||| ||| |||  | ||||||||||||||| ||||| ||| ||||    
T  27337225 tgggttaggttagcatatgtcaccagttgagtaccgtactatccttcgatatcgtcttatg 27337165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 210 - 417
Target Start/End: Complemental strand, 37517843 - 37517636
Alignment:
Q  210 tttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttgacacatgtc 309  Q
    |||||||||||||||||| || |||| | ||||| || ||||||||||||| | |||  ||| | ||||| ||||||  | || ||||||| |   |||     
T  37517843 tttggatggtcttcgtggtacgatttaaaattttgatgttagcagttttactagcaatgacaccgtccctcctaaagcacgacatgttttggcgagtgtt 37517744  T
Q  310 ctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgat 408  Q
    |||||||| ||||||| || |   ||||||||| |||||| |||||||||| ||| |||| ||| ||||||  ||||||||||||| ||||| |||||||    
T  37517743 ctttttag-aaaaagttttcatgatatgaaagttaagtttgacatgaccacgagatagaagataatttttggatgtttgcaagcagcacatgctcatgat 37517645  T
Q  409 tttcttcta 417  Q
    |||||||||    
T  37517644 tttcttcta 37517636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 4700419 - 4700344
Alignment:
Q  185 gtatggactcttattttgactgtgttttggatggtcttcgtggcacaattttagattttaattttagcagttttac 260  Q
    ||||| ||||| ||||||||  || |||||||||||||||||| || ||| |||||||| | | ||||||||||||    
T  4700419 gtatgaactctgattttgacaatgctttggatggtcttcgtggtacgattctagattttgactgtagcagttttac 4700344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 40840270 - 40840123
Alignment:
Q  247 tttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttgacacatgtcctttttagtaaaaagtgtttagattatgaaagtaaag 346  Q
    ||||||| |||||| | |||| ||| | |||||  ||||| | ||| |||||||||   |||| |||||||||||| ||||| ||  |||| || ||||     
T  40840270 tttagcaattttactagcaaggacaccgtccctcttaaagccgaacatgttttgacgagtgtcatttttagtaaaa-gtgttcaggatatggaactaaaa 40840172  T
Q  347 tttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag 395  Q
    ||||| ||| |||| ||||| |||| | |||||| ||||||||||||||    
T  40840171 tttaatatgcccacaagacacaaaacaatttttgggtgtttgcaagcag 40840123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 420
Target Start/End: Complemental strand, 53171253 - 53171042
Alignment:
Q  209 ttttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttgacacatgt 308  Q
    |||||||| ||||||||||  | |||| ||||||| || |||| |||||||| | |||  ||||| ||||| ||||||  |||| ||||||| |   ||     
T  53171253 ttttggattgtcttcgtggtgcgatttcagattttgatgttagtagttttactagcaaagacatcgtccctcctaaagcacaacatgttttggcgagtgc 53171154  T
Q  309 cctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatga 407  Q
     ||||||||||||| ||||| | | |||| |||| |||||| |||| ||||| ||| |||||| | ||||||  ||||||||||||| ||||| ||| ||    
T  53171153 tctttttagtaaaa-gtgttcaaaatatggaagttaagtttgacataaccacgagaaagaaaacaatttttggatgtttgcaagcagcacatgctcagga 53171055  T
Q  408 ttttcttctagct 420  Q
    |||||||||||||    
T  53171054 ttttcttctagct 53171042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 425
Target Start/End: Original strand, 28040481 - 28040695
Alignment:
Q  210 tttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttgacacatgtc 309  Q
    |||||||||||||||||| || ||| |||||||| || ||||||||||||| | |||  ||| ||||||| ||||||  |||| ||||||  |   ||      
T  28040481 tttggatggtcttcgtggtacgattctagattttgatgttagcagttttactagcaatgacaccatccctcctaaagcacaacatgtttttgcgagtgct 28040580  T
Q  310 ctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgat 408  Q
    |||||||||||||| || | ||  |||| || | |||||| |||||||||| ||||||||   | ||||||  ||||||||||||| ||||| ||| |||    
T  28040581 ctttttagtaaaaa-tg-tcaggatatggaaattaagtttgacatgaccacgagacagaaggcaatttttggatgtttgcaagcagaacatgctcaagat 28040678  T
Q  409 tttcttctagctgtccc 425  Q
    |||||||||||| ||||    
T  28040679 tttcttctagctatccc 28040695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 7435123 - 7435050
Alignment:
Q  187 atggactcttattttgactgtgttttggatggtcttcgtggcacaattttagattttaattttagcagttttac 260  Q
    ||||||||| ||||||||  ||||||||||||||||||| | || ||| |||||||| | ||||| ||||||||    
T  7435123 atggactctgattttgacgatgttttggatggtcttcgtagtaccattctagattttgactttagtagttttac 7435050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 484
Target Start/End: Complemental strand, 19036081 - 19035908
Alignment:
Q  310 ctttttagtaaaaagtgtttagattatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgat 408  Q
    ||||||||||||| ||||| ||  |||| |||| |||||| |||||||||| ||||| ||   | ||||||  ||| ||||||||| ||||| ||  |||    
T  19036081 ctttttagtaaaa-gtgttcaggatatggaagttaagtttgacatgaccacgagacaaaaggcaatttttggatgtctgcaagcagcacatgctcgggat 19035983  T
Q  409 tttcttctagctgtcccttattgatgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatat 484  Q
    |||||||||||| ||||  ||||||||||||||| || | ||| ||| |||  | || | ||||||||||||||||    
T  19035982 tttcttctagctatcccg-attgatgagttaggtcaacatatgtcaccagtggagtatcatactatccttagatat 19035908  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 484
Target Start/End: Original strand, 26225238 - 26225298
Alignment:
Q  424 ccttattgatgagttaggttaaaaaatgccacaagtacaataccgtactatccttagatat 484  Q
    ||||||||||||||||||| || | ||| |||||||| | |||||||||||||||||||||    
T  26225238 ccttattgatgagttaggtcaacatatgtcacaagtagagtaccgtactatccttagatat 26225298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 420
Target Start/End: Original strand, 7200049 - 7200136
Alignment:
Q  334 tatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcaga-catgttcatgattttcttctagct 420  Q
    |||| |||| |||||| | |||||||| ||||||||| ||||| ||| ||||| ||||| ||| |||| ||| |||||||||||||||    
T  7200049 tatggaagtgaagtttgatatgaccacaagacagaaagtagttcttgggtgttggcaagaagaacatgctcaggattttcttctagct 7200136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 442
Target Start/End: Original strand, 29337562 - 29337670
Alignment:
Q  334 tatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgattttcttctagctgtcccttattga 432  Q
    |||| |||| |||||| |||||||| | ||||||||    ||||| | |||||||||||||| ||||| ||| ||||||||||||||| | ||| |||||    
T  29337562 tatggaagttaagtttgacatgacctctagacagaaggccgttttggggtgtttgcaagcagcacatgctcaggattttcttctagctat-cctgattga 29337660  T
Q  433 tgagttaggt 442  Q
    || |||||||    
T  29337661 tgggttaggt 29337670  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 439
Target Start/End: Complemental strand, 47679752 - 47679647
Alignment:
Q  334 tatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgattttcttctagctgtcccttattga 432  Q
    |||| |||| |||||| |||||||||| |||||||| | |||||| |  |||||||||| || ||||| ||| ||||||||||||||| | ||| |||||    
T  47679752 tatggaagttaagtttgacatgaccactagacagaagacagttttaggatgtttgcaagtagcacatgctcaggattttcttctagctat-cctgattga 47679654  T
Q  433 tgagtta 439  Q
    |||||||    
T  47679653 tgagtta 47679647  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 300
Target Start/End: Complemental strand, 29862555 - 29862465
Alignment:
Q  210 tttggatggtcttcgtggcacaattttagattttaattttagcagttttacaaacaagaacatcatccctactaaagtccaacttgttttg 300  Q
    |||||||||||||||||| || ||| ||||||||    |||| |||||||| |||||| ||||| ||||| ||||||  |||| |||||||    
T  29862555 tttggatggtcttcgtggtacgattctagattttggcattagtagttttactaacaaggacatcgtccctcctaaagcacaacatgttttg 29862465  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 442
Target Start/End: Complemental strand, 49018583 - 49018475
Alignment:
Q  334 tatgaaagtaaagtttaacatgaccaccagacagaaaatagtttttgcgtgtttgcaagcag-acatgttcatgattttcttctagctgtcccttattga 432  Q
    |||| |||| |||||| || ||||||| ||||| || | | |||| |  ||||||||||||| ||||| ||||||||||||||||||| | ||| |||||    
T  49018583 tatgtaagttaagtttgacgtgaccacgagacaaaagacaattttaggatgtttgcaagcagtacatgctcatgattttcttctagctat-cctgattga 49018485  T
Q  433 tgagttaggt 442  Q
    || |||||||    
T  49018484 tgggttaggt 49018475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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