View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11403_low_5 (Length: 291)
Name: NF11403_low_5
Description: NF11403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11403_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 45127744 - 45128001
Alignment:
| Q |
10 |
gcacagagcccaattgacaaagactaaagcccaatgggaaaggatctttccactttgggggaaagagtagtcagtgatccctagtgactccactgaaggc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45127744 |
gcacagagcccaattgacaaagactaaagcccaatgggaaaggatctttacactttgggggaaagagtagtcagtg----------actccactgaaggc |
45127833 |
T |
|
| Q |
110 |
tctctggactcttataaaatggagccaaaattttgacagtgatttctcgacaattcaaacaagttatttaattaatatatatttacctgttggccttcaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45127834 |
tctctggactcttataaaatggagccaaaattttgacagtgatttctcaacaattcaaacaagttatttaattaatatatatttacctgttggccttcaa |
45127933 |
T |
|
| Q |
210 |
accatactctgtaaggaactgttgtattcagtcctaattgtctagccaatttttgaactaaggttctg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45127934 |
accatactctgtaaggaactgttgtattcagtcctaattgtctagccaatttttgaactaaggttctg |
45128001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University