View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11403_low_8 (Length: 228)
Name: NF11403_low_8
Description: NF11403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11403_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 542300 - 542107
Alignment:
| Q |
33 |
tccttttctcactatcataactaatttcaaccaaatctatcctctacttttttgt------aataattnnnnnnncaaattcacataaaagttagatann |
126 |
Q |
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| T |
542300 |
tccttttatcactatcataactaatttcaaccaaatctatcctctacttttttttttttttaataattaaaaaaacaaattgacataaaagtttgatatt |
542201 |
T |
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| Q |
127 |
nnnnnactcttgctaatatcatgcattggtttagaaaatcttaaatacaagttttgtctttaaaatataagttgtagcatttcattatgtaata |
220 |
Q |
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| T |
542200 |
tttttactcttgctaatatcatgcattggttaagaaaatcttaaatacaagttttgtcattaaaatataagttgttgcatttcattatgtaata |
542107 |
T |
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