View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11404_low_1 (Length: 418)
Name: NF11404_low_1
Description: NF11404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11404_low_1 |
 |  |
|
Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 13453171 - 13453565
Alignment:
| Q |
18 |
catcgctgtgttgacataatcaataggaatgatctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13453171 |
catcgctgtgttgacataatcaataggaatgatctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccct |
13453270 |
T |
 |
| Q |
118 |
ccaatcaaacttcctgctactatctttctccctaccaataatgtgaaatacttgtgtgtttaaatgttcataatttaatttaaacatttagaagtgcata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13453271 |
ccaatcaaacttcctgctactatctttctccctaccaataatgtgaaatacttgtgtgtttaaatgttcataatttaatttaaacatttagaagtgcata |
13453370 |
T |
 |
| Q |
218 |
tttagcatcatatggaaatggaagtatatatattttccaaatgcttatatacctgcaagtaaaggaaaaacaggaagctctagaggcttttcaggtgcac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13453371 |
tttagcatcatatggaaatggaagtatatatatttttcaaatgcttatatacctgcaagtaaaggaaaaacaggaagctctagaggcttttcaggtgcac |
13453470 |
T |
 |
| Q |
318 |
caaccattacaagctttccatgagacttgagcaaaccaatcaacggtaatagaggatgatccgctgaaacagtgtcgataataccatccaaagta |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13453471 |
caaccattacaagctttccatgagacttgagtaaaccaatcagaggtaatagcggatgatccgctgaaactgtgtcgataataccatccaaagta |
13453565 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 13425652 - 13425796
Alignment:
| Q |
22 |
gctgtgttgacataatcaataggaatgatctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaa |
121 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13425652 |
gctgtgttgacataatcaataggaacaacctcaatatcaggtgttacattgtgttcggccgcaaaatcaatcatttcttgagtctcctttatccctccaa |
13425751 |
T |
 |
| Q |
122 |
tcaaacttcctgctactatctttctccctaccaataatgtgaaat |
166 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||||||||||| |
|
|
| T |
13425752 |
tcaaacttccagctactaactttctccctacaaataatgtgaaat |
13425796 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 13418778 - 13418918
Alignment:
| Q |
22 |
gctgtgttgacataatcaataggaatgatctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaa |
121 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| || |||||||||| |||||||||| ||||||| |||||||||| |
|
|
| T |
13418778 |
gctgtgttgacataatcaataggaacaacctcaatatcaggcgttacattgtgttctgctgcaaaatcaaccatttcttgactctcctttatccctccaa |
13418877 |
T |
 |
| Q |
122 |
tcaaacttcctgctactatctttctccctaccaataatgtg |
162 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
13418878 |
tcaaacttccagctactaactttctccctacaaataatgtg |
13418918 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 13446361 - 13446502
Alignment:
| Q |
25 |
gtgttgacataatcaataggaatgatctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaatca |
124 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||||| |||||||||||| || |||||||||||||||||||||||||| || ||||||||||| | |
|
|
| T |
13446361 |
gtgttgacataatcaataggaacaacctcaatctcaggcgttacattgtgtttagcagcaaaatcaatcatttcttgagtctcttttatccctccaatta |
13446460 |
T |
 |
| Q |
125 |
aacttcctgctactatctttctccctaccaataatgtgaaat |
166 |
Q |
| |
|
||||||| |||| | |||||||||||| ||||||||||||| |
|
|
| T |
13446461 |
aacttccagctattgactttctccctacaaataatgtgaaat |
13446502 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 13412400 - 13412544
Alignment:
| Q |
22 |
gctgtgttgacataatcaataggaatgatctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaa |
121 |
Q |
| |
|
|||||||||||||||||||| |||| | ||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
13412400 |
gctgtgttgacataatcaatcggaacaacctcgatatccggctttacattgtgttctgccgcaaaattaatcatttcttgagtctcctttaaccctccaa |
13412499 |
T |
 |
| Q |
122 |
tcaaacttcctgctactatctttctccctaccaataatgtgaaat |
166 |
Q |
| |
|
|||||| |||| ||| |||||||||| ||||||| |||||| |
|
|
| T |
13412500 |
cttgacttccagctaatatttttctccctatcaataatatgaaat |
13412544 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 169
Target Start/End: Original strand, 13448908 - 13449028
Alignment:
| Q |
51 |
ctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctcct--tgatccctccaatcaaacttcctgctactatctttctcc |
148 |
Q |
| |
|
|||| |||||||||||||||||||||| || |||||||||||||||||||||||||| | | ||| ||||||| |||||| ||||||||||||| || |
|
|
| T |
13448908 |
ctcagtatcaggctttacattgtgttctgctgcaaaatcaatcatttcttgagtctctttatcatctctccaattaaactttaagctactatctttcccc |
13449007 |
T |
 |
| Q |
149 |
ctaccaataatgtgaaatact |
169 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
13449008 |
ctaccaataatgtaaaatact |
13449028 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 267 - 414
Target Start/End: Original strand, 13425905 - 13426052
Alignment:
| Q |
267 |
tacctgcaagtaaaggaaaaacaggaagctctagaggcttttcaggtgcaccaaccattacaagctttccatgagacttgagcaaaccaatcaacggtaa |
366 |
Q |
| |
|
||||| ||||||||| ||| ||||||||||||||||||||| | |||||||||||||||| ||||||| ||| || | ||||||||||| ||||| |
|
|
| T |
13425905 |
tacctccaagtaaagaaaatacaggaagctctagaggctttgccaccccaccaaccattacaagttttccattagatttcaataaaccaatcaatggtaa |
13426004 |
T |
 |
| Q |
367 |
tagaggatgatccgctgaaacagtgtcgataataccatccaaagtacc |
414 |
Q |
| |
|
| ||||||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
13426005 |
gataggatgacttgccgaaacagtgtcgataataccattcaaagtacc |
13426052 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 418
Target Start/End: Original strand, 13412715 - 13412818
Alignment:
| Q |
315 |
caccaaccattacaagctttccatgagacttgagcaaaccaatcaacggtaatagaggatgatccgctgaaacagtgtcgataataccatccaaagtacc |
414 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| | | |||||||| ||||| ||||||||| | |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
13412715 |
caccaagcattataagctttccatgagacttcaagagaccaatcattggtaagagaggatgaacagctgaaactgtgtcaataataccatccaaagtacc |
13412814 |
T |
 |
| Q |
415 |
aatt |
418 |
Q |
| |
|
|||| |
|
|
| T |
13412815 |
aatt |
13412818 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 414
Target Start/End: Original strand, 13419015 - 13419162
Alignment:
| Q |
267 |
tacctgcaagtaaaggaaaaacaggaagctctagaggcttttcaggtgcaccaaccattacaagctttccatgagacttgagcaaaccaatcaacggtaa |
366 |
Q |
| |
|
||||| ||||||||| ||| ||||||||||||||||||||| | | |||||||||||||||| ||||||| ||| || | ||| ||| ||| ||||| |
|
|
| T |
13419015 |
tacctccaagtaaagaaaatacaggaagctctagaggctttgccactccaccaaccattacaagttttccattagatttcaataaagcaaccaatggtaa |
13419114 |
T |
 |
| Q |
367 |
tagaggatgatccgctgaaacagtgtcgataataccatccaaagtacc |
414 |
Q |
| |
|
| |||||| | ||| ||||| ||||| |||||||||| ||||||||| |
|
|
| T |
13419115 |
aataggatggttcgccgaaactgtgtcaataataccattcaaagtacc |
13419162 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 414
Target Start/End: Complemental strand, 13389700 - 13389587
Alignment:
| Q |
301 |
aggcttttcaggtgcaccaaccattacaagctttccatgagacttgagcaaaccaatcaacggtaatagaggatgatccgctgaaacagtgtcgataata |
400 |
Q |
| |
|
|||||| |||||| |||||||||||||||| |||||||||||||| | || ||||| | ||||| | |||||||| |||||||| || ||||| ||| |
|
|
| T |
13389700 |
aggcttgtcaggtacaccaaccattacaagttttccatgagacttcaataatccaattaggggtaagataggatgatttgctgaaactgtatcgatgata |
13389601 |
T |
 |
| Q |
401 |
ccatccaaagtacc |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13389600 |
ccatccaaagtacc |
13389587 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 13411693 - 13411596
Alignment:
| Q |
22 |
gctgtgttgacataatcaataggaatgatctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctcc |
119 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||||||||| | ||||||||||| || |||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
13411693 |
gctgtgttgacataatccataggtatgacttcaatatcaggttgtacattgtgtttagcagcaaaatcaatcatctcttgagtttccttcattcctcc |
13411596 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 150
Target Start/End: Original strand, 13372577 - 13372696
Alignment:
| Q |
31 |
acataatcaataggaatgatctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaatcaaacttc |
130 |
Q |
| |
|
|||||||| || ||||| | |||||||||||| || |||| |||| || |||||||||||||||||||| |||||||| ||||||||||||| ||| | |
|
|
| T |
13372577 |
acataatctattggaataacctcaatatcaggtttcacatcatgtttggctgcaaaatcaatcatttcttgtgtctcctttatccctccaatcatactcc |
13372676 |
T |
 |
| Q |
131 |
ctgctactatctttctccct |
150 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
13372677 |
caccaattatctttctccct |
13372696 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 414
Target Start/End: Complemental strand, 13394099 - 13393985
Alignment:
| Q |
300 |
gaggcttttcaggtgcaccaaccattacaagctttccatgagacttgagcaaaccaatcaacggtaatagaggatgatccgctgaaacagtgtcgataat |
399 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||| ||| | || | ||||||| | ||||| |||||||||||||||||||| || ||||| || |
|
|
| T |
13394099 |
gaggcttgtcaggtgcaccgaccattacaagttttccgtgatattttaataaaccaactagaggtaagagaggatgatccgctgaaactgtatcgatgat |
13394000 |
T |
 |
| Q |
400 |
accatccaaagtacc |
414 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13393999 |
gccatccaaagtacc |
13393985 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 413
Target Start/End: Original strand, 13446561 - 13446707
Alignment:
| Q |
267 |
tacctgcaagtaaaggaaaaacaggaagctctagaggcttttcaggtgcaccaaccattacaagctttccatgagacttgagcaaaccaatcaacggtaa |
366 |
Q |
| |
|
||||| ||||||||| ||| | |||||| |||||||||||| | ||||||||||||||| |||||||||| ||| || | ||||||||||| |||| |
|
|
| T |
13446561 |
tacctccaagtaaagaaaatataggaagttctagaggctttgctactgcaccaaccattaccagctttccattagatttcaataaaccaatcaatggtac |
13446660 |
T |
 |
| Q |
367 |
tagaggatgatccgctgaaacagtgtcgataataccatccaaagtac |
413 |
Q |
| |
|
| ||||||| ||| ||||| ||||| ||||| |||| |||||||| |
|
|
| T |
13446661 |
aacaggatgactcgccgaaactgtgtcaataatgccattcaaagtac |
13446707 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 414
Target Start/End: Complemental strand, 13385898 - 13385761
Alignment:
| Q |
277 |
taaaggaaaaacaggaagctctagaggcttttcaggtgcaccaaccattacaagctttccatgagacttgagcaaaccaatcaacggtaatagaggatga |
376 |
Q |
| |
|
||||||||| || || | ||| |||||||| |||||| |||||||||||||||| |||||||||||||| || || |||| | || || | ||||||| |
|
|
| T |
13385898 |
taaaggaaagacggggatctccagaggcttgtcaggtacaccaaccattacaagttttccatgagacttcagtaatccaagtagtggcaagacaggatga |
13385799 |
T |
 |
| Q |
377 |
tccgctgaaacagtgtcgataataccatccaaagtacc |
414 |
Q |
| |
|
| |||||||| || || || ||||||||||||||||| |
|
|
| T |
13385798 |
tttgctgaaacggtatcaatgataccatccaaagtacc |
13385761 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 13389970 - 13389836
Alignment:
| Q |
22 |
gctgtgttgacataatcaataggaatgatctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaa |
121 |
Q |
| |
|
|||||||| |||||||| | ||||| || ||||| ||||| ||||| |||||| || ||||| |||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
13389970 |
gctgtgttaacataatccacaggaacgacttcaatgtcaggttttacgctgtgtttagcagcaaagtcaagcatctcttgagtctccttgatgcctccaa |
13389871 |
T |
 |
| Q |
122 |
tcaaacttcctgctactatctttctccctaccaat |
156 |
Q |
| |
|
| |||||| ||||| | |||||||||| ||||| |
|
|
| T |
13389870 |
tattacttccggctaccagctttctccctgccaat |
13389836 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 13386182 - 13386045
Alignment:
| Q |
22 |
gctgtgttgacataatcaataggaatgatctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaa |
121 |
Q |
| |
|
|||||||| |||||||| | ||||| | ||||| ||||| ||||||||||||| || ||||| |||| ||| |||||||||||||| || | ||||| |
|
|
| T |
13386182 |
gctgtgttaacataatccacaggaacaacttcaatgtcaggttttacattgtgtttagcagcaaattcaagcatctcttgagtctccttaatgcttccaa |
13386083 |
T |
 |
| Q |
122 |
tcaaacttcctgctactatctttctccctaccaataat |
159 |
Q |
| |
|
| |||||| ||||| | |||||||||| |||||||| |
|
|
| T |
13386082 |
ttccacttccagctaccagctttctccctgccaataat |
13386045 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 411
Target Start/End: Complemental strand, 13411419 - 13411307
Alignment:
| Q |
299 |
agaggcttttcaggtgcaccaaccattacaagctttccatgagacttgagcaaaccaatcaacggtaatagaggatgatccgctgaaacagtgtcgataa |
398 |
Q |
| |
|
|||||||| || || |||||||||| |||||||||||||||||| || || ||| |||| | ||||| || | |||||| || |||| ||||| |||| |
|
|
| T |
13411419 |
agaggcttctctggggcaccaaccaatacaagctttccatgagattttagtaaatcaattaggggtaagagggaatgatcagcagaaattgtgtcaataa |
13411320 |
T |
 |
| Q |
399 |
taccatccaaagt |
411 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13411319 |
taccatccaaagt |
13411307 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 13378366 - 13378408
Alignment:
| Q |
82 |
gcaaaatcaatcatttcttgagtctccttgatccctccaatca |
124 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
13378366 |
gcaaaatcaatcatttcttgtgtttccttcatccctccaatca |
13378408 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 47600540 - 47600665
Alignment:
| Q |
25 |
gtgttgacataatcaataggaatgatctcaatatcaggctttacattgtgttccgccgcaaaatcaatcatttcttgagtctccttgatccctccaatca |
124 |
Q |
| |
|
||||| |||||||| ||||| |||| ||||| ||| ||||||||||||| || |||||||||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
47600540 |
gtgttaacataatccatagggatgacttcaatggtaggttttacattgtgtttagcagcaaaatcaagcatatcttgagtctccttcatccctccaatat |
47600639 |
T |
 |
| Q |
125 |
aacttcctgctactatctttctccct |
150 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
47600640 |
tacttccagctactatctttctccct |
47600665 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 412
Target Start/End: Original strand, 47600846 - 47600980
Alignment:
| Q |
278 |
aaaggaaaaacaggaagctctagaggcttttcaggtgcaccaaccattacaagctttccatgagacttgagcaaaccaatcaacggtaatagaggatgat |
377 |
Q |
| |
|
|||| ||| ||||| ||||| |||||||| | || ||||||||||||||||| |||||||||||||| || || ||||| | ||| | |||||||| | |
|
|
| T |
47600846 |
aaagtaaagacagggagctccagaggcttcgctggagcaccaaccattacaagttttccatgagacttcagtaatccaattagaggtgagagaggatgtt |
47600945 |
T |
 |
| Q |
378 |
ccgctgaaacagtgtcgataataccatccaaagta |
412 |
Q |
| |
|
| |||||||| ||||| || ||||||||||||||| |
|
|
| T |
47600946 |
cagctgaaactgtgtcaatgataccatccaaagta |
47600980 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 408
Target Start/End: Complemental strand, 28431302 - 28431168
Alignment:
| Q |
274 |
aagtaaaggaaaaacaggaagctctagaggcttttcaggtgcaccaaccattacaagctttccatgagacttgagcaaaccaatcaacggtaatagagga |
373 |
Q |
| |
|
|||||||||||| || || ||||| |||||||| ||||||||||||||||| ||||| ||||||||||| || | | ||||||||| ||||| | |||| |
|
|
| T |
28431302 |
aagtaaaggaaatactggtagctccagaggcttctcaggtgcaccaaccataacaagttttccatgagatttcaaaagaccaatcaaaggtaacaaagga |
28431203 |
T |
 |
| Q |
374 |
tgatccgctgaaacagtgtcgataataccatccaa |
408 |
Q |
| |
|
|| | || ||||| ||||| || ||||||||||| |
|
|
| T |
28431202 |
tggacggcagaaactgtgtcaatgataccatccaa |
28431168 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 28431572 - 28431502
Alignment:
| Q |
82 |
gcaaaatcaatcatttcttgagtctccttgatccctccaatcaaacttcctgctactatctttctccctac |
152 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||||| |||| || ||| ||| ||||||||||||||| |
|
|
| T |
28431572 |
gcaaaatctatcatttcttgtgtctccttaattcctccgatcaggctccctcctattatctttctccctac |
28431502 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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