View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11404_low_5 (Length: 238)
Name: NF11404_low_5
Description: NF11404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11404_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 28331496 - 28331719
Alignment:
| Q |
1 |
ccacaaagctagtgttggaagtgtccctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattt |
100 |
Q |
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| T |
28331496 |
ccacaaagctaatgttggaagtgttcctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattt |
28331595 |
T |
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| Q |
101 |
tcttgtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccataggtttttgagagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331596 |
tcttgtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccataggtttttgagagtt |
28331695 |
T |
|
| Q |
201 |
ttgtaagtgccttgtgtggatttt |
224 |
Q |
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|||| |||||||||||||| |||| |
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| T |
28331696 |
ttgtgagtgccttgtgtgggtttt |
28331719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 224
Target Start/End: Original strand, 28310448 - 28310666
Alignment:
| Q |
6 |
aagctagtgttggaagtgtccctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattttcttg |
105 |
Q |
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|||||| ||||||||| |||| ||||| ||||||| ||||||||||||||||| ||||| | ||| |||||||||||| ||||| |||||||| || |
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| T |
28310448 |
aagctaatgttggaagcatcccaattgataatttgtcatgatcaagtgcacaaagtgcatgtgggacagttctattagagaagatttgagaattttcatg |
28310547 |
T |
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| Q |
106 |
taacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccataggtttttgagagttttgta |
205 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||||||| ||||| |
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| T |
28310548 |
taaaacttgtttggctagttgaggtgatgagattactatggttgttaatgttcctagttttagtgtcataattggtccatagatgtttgagagatttgtg |
28310647 |
T |
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| Q |
206 |
agtgccttgtgtggatttt |
224 |
Q |
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|||| | |||||||||||| |
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| T |
28310648 |
agtgtcctgtgtggatttt |
28310666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 28296959 - 28297178
Alignment:
| Q |
5 |
aaagctagtgttggaagtgtccctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattttctt |
104 |
Q |
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||||||| ||||||||| ||| ||||||||||||| |||||||| ||||| || ||||| | || |||||||||||| |||||||||||||| | |
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| T |
28296959 |
aaagctaatgttggaagccacccaattgagaatttgtcatgatcaactgcactaagtgcatgtggaacagttctattagagaagatttgggaattttcat |
28297058 |
T |
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| Q |
105 |
gtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccataggtttttgagagttttgt |
204 |
Q |
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|||| |||||||||||| |||||| ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||||| |
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| T |
28297059 |
gtaaggcttgtttggctacttgtggagatgaaattactatggttgttattgttcctagttttagtgtcatgattggtccatagttttgtgagagttttgt |
28297158 |
T |
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| Q |
205 |
aagtgccttgtgtggatttt |
224 |
Q |
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|||||||| ||||| |||| |
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| T |
28297159 |
gagtgccttatgtgggtttt |
28297178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28288258 - 28288035
Alignment:
| Q |
1 |
ccacaaagctagtgttggaagtgtccctattgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattt |
100 |
Q |
| |
|
||||||||||| ||||||||| ||| | ||||||||||| ||||||||||||| ||||||| | ||| |||||| ||||| ||||| |||||| |
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| T |
28288258 |
ccacaaagctaatgttggaagccacccaagtgagaatttgttatgatcaagtgcatgtattgcatgtgggacagttctatttgagaagatttgagaattt |
28288159 |
T |
|
| Q |
101 |
tcttgtaacacttgtttggctagttgtggtgatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccataggtttttgagagtt |
200 |
Q |
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|| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||||||| | |
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| T |
28288158 |
tcatgtaaaacttgtttggctaattgtggtgatgaaattactatggttgttaatgttcctagttttagtgtcataattggtccatagatgtttgagagat |
28288059 |
T |
|
| Q |
201 |
ttgtaagtgccttgtgtggatttt |
224 |
Q |
| |
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|||| |||| | ||||||| |||| |
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| T |
28288058 |
ttgtgagtgtcctgtgtgggtttt |
28288035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 224
Target Start/End: Original strand, 28321047 - 28321240
Alignment:
| Q |
31 |
tgagaatttgtgatgatcaagtgcacaaattgcatccgagactactctattagagaatatttgggaattttcttgtaacacttgtttggctagttgtggt |
130 |
Q |
| |
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||||||||||| |||||||| |||| | ||||||| | ||| |||||| || || ||||| ||||| || ||||| ||||||||||||| |||||| |
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| T |
28321047 |
tgagaatttgtcatgatcaactgcagagattgcatgtgggacagttctatttgaaaagatttgagaattgtcatgtaaaacttgtttggctacttgtggg |
28321146 |
T |
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| Q |
131 |
gatgagattactatggttgttaatgttcctagttttaatgtcatgattggtccataggtttttgagagttttgtaagtgccttgtgtggatttt |
224 |
Q |
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| T |
28321147 |
gaagagatcactatggttgttatgcttcctagttttaatgtcatgattggtccatagatttttgagagttttgttaatgccttgtgtggatttt |
28321240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 28336389 - 28336481
Alignment:
| Q |
110 |
acttgtttggctagttgtggtgatgagattactatggttgttaatgtt-cctagttttaatgtcatgattggtccataggtttttgagagtttt |
202 |
Q |
| |
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|||||||||| ||||||||| |||||||||||||||| |||| ||||| || ||||||| ||||||||||||||| ||| |||| ||||||||| |
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| T |
28336389 |
acttgtttggttagttgtggggatgagattactatggatgtt-atgttgccaagttttagtgtcatgattggtccgtagattttagagagtttt |
28336481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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