View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11405_high_14 (Length: 356)
Name: NF11405_high_14
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 54186467 - 54186140
Alignment:
| Q |
18 |
atttcatgaatgggacatctcataagctataaaattttaattattttcatgaagaataatgttttaattttacataataattatcttacggtgtcaaagg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
54186467 |
atttcatgaatgggacatctcataagctaaaaaatttaaattattttcatgaagaataatgttttaattttacataataattatcttacggtgtcaacgg |
54186368 |
T |
|
| Q |
118 |
taaaagtttactcttaagaaaagtaaaagtttacaacatagtggtaactaatcttcttcgaaaaatatgctgggaatggaaacatgttgggaactatgtg |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
54186367 |
taaaagtttactcttaaaaaaagtaaaagtttacaacatagtggtaactaatcttcttcgaaaaatatgctgggaatggaaacatgttgggaactatggg |
54186268 |
T |
|
| Q |
218 |
aataaaaggtgtgtatttcttcccatccaaattttttcatacgcacaatagttgggaaacgaactttaaaaatatatccaaacttgtaaaatggaatttt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54186267 |
aataaaaggtgtgtatttcttcccatccaaattttttcatacgcacaatagttgggaaacgaactttaaaaatatatccaaacttgtaaaatgaaatttt |
54186168 |
T |
|
| Q |
318 |
tattccgcttcattcaatttcacttctt |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
54186167 |
tattccgcttcattcaatttcacttctt |
54186140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University