View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11405_high_15 (Length: 336)

Name: NF11405_high_15
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11405_high_15
NF11405_high_15
[»] chr5 (5 HSPs)
chr5 (16-263)||(20700046-20700293)
chr5 (16-267)||(14810170-14810422)
chr5 (16-267)||(18587796-18588047)
chr5 (268-314)||(14810096-14810142)
chr5 (16-81)||(42563094-42563159)
[»] chr4 (4 HSPs)
chr4 (20-267)||(29575457-29575705)
chr4 (96-263)||(26000595-26000762)
chr4 (268-317)||(26000514-26000563)
chr4 (274-323)||(29575739-29575788)
[»] chr7 (3 HSPs)
chr7 (16-268)||(13010202-13010455)
chr7 (16-267)||(34692925-34693178)
chr7 (268-323)||(13010482-13010537)
[»] chr1 (5 HSPs)
chr1 (16-267)||(18657052-18657304)
chr1 (16-117)||(3230592-3230693)
chr1 (16-166)||(20948498-20948649)
chr1 (186-267)||(3230423-3230504)
chr1 (88-151)||(3230528-3230592)
[»] chr8 (1 HSPs)
chr8 (142-264)||(913983-914105)
[»] scaffold0862 (1 HSPs)
scaffold0862 (268-318)||(4462-4512)
[»] chr2 (1 HSPs)
chr2 (16-105)||(9680275-9680364)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 20700293 - 20700046
Alignment:
Q  16 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 115  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||    
T  20700293 acatcaaaagtactgcgtgaagcatgggataaggcttcttgtgaaagaacatgagcactaccgtttgcttgacgcctagtaaaaacaactacaaagtcgt 20700194  T
Q  116 tataatgatcaagtaaggttctacagtttggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatca 215  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  20700193 tatagtgatcaagtaaggttctagagtttggataattgaaccatactcagaaagattcatcttactattgtgcacatcatctgcaaccattttacaatca 20700094  T
Q  216 agctcaaaaataacattgtggtaccctaatgaagaaatccattgaatg 263  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||    
T  20700093 agctcaaaaatgacatcgtggtaccctaatgaagaaatccattgaatg 20700046  T

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Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 14810422 - 14810170
Alignment:
Q  16 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 115  Q
    |||||||||||| || |||||||||| |||||||||||||||| |||| |||||||  |||||||||| ||| |||||||||||||||||||||||||||    
T  14810422 acatcaaaagtattgtgtgaagcatgagataaggcttctcgtgcaagagcatgagcgctaccgtttgcctgacgcctagtaaaaacaactacaaagttgt 14810323  T
Q  116 tataatgatcaagtaaggttctacag-tttggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatc 214  Q
    |||| |||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||    
T  14810322 tatagtgatcaagtaaggttctataactttggataattgaaccatactcagagagattcttcttacgatcgtgcacatcatccacaaccattttacaatc 14810223  T
Q  215 aagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatgcctt 267  Q
    |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  14810222 aagctcaaaaatgacattgtggtatcctaatgaagaaatccactgaatgcctt 14810170  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 18587796 - 18588047
Alignment:
Q  16 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 115  Q
    ||||||||||||||| |||||| |||||||| || | |||||  |||| |||||||  || |||||| || | |||||||||||||||||||||||| ||    
T  18587796 acatcaaaagtactgtgtgaagtatgggatagggttgctcgtacaagagcatgagcgctatcgtttgttttacgcctagtaaaaacaactacaaagtcgt 18587895  T
Q  116 tataatgatcaagtaaggttct-acagtttggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatc 214  Q
     ||| ||||||  ||||||||| | | |||||||||| ||| |||||| |||||||||  | ||||| ||| |||||||||| || ||| ||||||||||    
T  18587896 aatagtgatcacataaggttctaaaaatttggataatcgaatcatacttagagagattaat-ttactgttgcgcacatcatccacgacccttttacaatc 18587994  T
Q  215 aagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatgcctt 267  Q
     |||| |||| | |  |||||||| ||||| ||||||||||||||||||||||    
T  18587995 tagctaaaaattcatcttgtggtatcctaacgaagaaatccattgaatgcctt 18588047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 14810142 - 14810096
Alignment:
Q  268 ctattgtcatcacaacctcacaataagatgtcaaagcaacaataaat 314  Q
    |||||||||||||| |||||||||||| |||||| ||||||| ||||    
T  14810142 ctattgtcatcacagcctcacaataagttgtcaaggcaacaacaaat 14810096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 42563094 - 42563159
Alignment:
Q  16 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgttt 81  Q
    |||||||||||||| | ||||||||||||||||||| ||| ||  ||| |||||||  ||||||||    
T  42563094 acatcaaaagtacttcctgaagcatgggataaggctgctcatgtgagagcatgagcgctaccgttt 42563159  T

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Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 29575457 - 29575705
Alignment:
Q  20 caaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgttata 119  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||  |||| ||||||||| |||||||||||||||||||||||| ||||||    
T  29575457 caaaagtactgcgtgaagcatgggataaggcttctcgtgcaagagcatgagcgctaccatttgcttgacgcctagtaaaaacaactacaaagtcgttata 29575556  T
Q  120 atgatcaagtaaggttctacagttt-ggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatcaagc 218  Q
     |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  29575557 gtgatcaagtaaggttctacagttttggatgattgaaccatactcagagagattcatcttactattgtgcacatcatctacaaccattttacaatccagc 29575656  T
Q  219 tcaaaaataacattgtggtaccctaatgaagaaatccattgaatgcctt 267  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29575657 tcaaaaatgacattgtggtaccctaatgaagaaatccattgaatgcctt 29575705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 263
Target Start/End: Complemental strand, 26000762 - 26000595
Alignment:
Q  96 aaaaacaactacaaagttgttataatgatcaagtaaggttctacagttt-ggataattgaaccatactcagagagattcttcttactattgtgcacatca 194  Q
    ||||| || ||||||||  ||| | |||||||||||||||||| | ||| ||| ||| |||| ||||| |||||||||   |||| | ||||||||||||    
T  26000762 aaaaaaaattacaaagtctttaaagtgatcaagtaaggttctaaaattttggagaatcgaac-atactgagagagattaagcttattgttgtgcacatca 26000664  T
Q  195 tctacaaccattttacaatcaagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatg 263  Q
    || ||||||||||||||||| ||||||||||| || || | ||| ||||| ||||||||| ||| ||||    
T  26000663 tccacaaccattttacaatccagctcaaaaatcaccttatcgtatcctaaggaagaaatcgattcaatg 26000595  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 26000563 - 26000514
Alignment:
Q  268 ctattgtcatcacaacctcacaataagatgtcaaagcaacaataaatgtg 317  Q
    ||||||||||||||||||||||||| | ||||| |||| |||| ||||||    
T  26000563 ctattgtcatcacaacctcacaatatgttgtcatagcagcaattaatgtg 26000514  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 29575739 - 29575788
Alignment:
Q  274 tcatcacaacctcacaataagatgtcaaagcaacaataaatgtgcctttc 323  Q
    |||||||| ||||||| |||| |||||||||| |||||||||||| ||||    
T  29575739 tcatcacagcctcacagtaagctgtcaaagcagcaataaatgtgcatttc 29575788  T

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Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 13010202 - 13010455
Alignment:
Q  16 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 115  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| |||| |||| ||  |||||||| ||||| |||||||||||||||||||||||| ||    
T  13010202 acatcaaaagtactgcgtgaaacatgggataagacttctcgtgcaagagcatgggcgctaccgtttccttgacgcctagtaaaaacaactacaaagtcgt 13010301  T
Q  116 tataatgatcaagtaaggttctacagttt-ggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatc 214  Q
    |||| |||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||||||    
T  13010302 tatagtgatcaagtaaggttctacaattttggacaatcgaaccatactcagagagattcatcttaccgttgtgcacatcatccacaaccattttacaatc 13010401  T
Q  215 aagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatgccttc 268  Q
    ||||| |||||| ||||||||||| | |||||||||||||||||||||||||||    
T  13010402 aagcttaaaaatcacattgtggtatcgtaatgaagaaatccattgaatgccttc 13010455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 34693178 - 34692925
Alignment:
Q  16 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagtt-g 114  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||| ||||| |  ||| |||||||||| ||| ||||||||||||||||||||| |    
T  34693178 acatcaaaagtactgcgtgaagcatgggataaggtttctcgtacaagagcatgaacgctactgtttgcttgacgccaagtaaaaacaactacaaagtttg 34693079  T
Q  115 ttataatgatcaagtaaggttctacagtttg-gataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaat 213  Q
    ||||| |||||||||||| | ||||| |||  |||||| ||| ||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||||    
T  34693078 ttatagtgatcaagtaagatcctacaattttagataatcgaatcatactcagcgagattcatcttactattgcgcacatcatccacaaccattttacaat 34692979  T
Q  214 caagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatgcctt 267  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||    
T  34692978 caagctcaaaaatcacattgtggtatcctaacgaagaaatccatcgaatgcctt 34692925  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 13010482 - 13010537
Alignment:
Q  268 ctattgtcatcacaacctcacaataagatgtcaaagcaacaataaatgtgcctttc 323  Q
    ||||||| ||||||||||||||||||| |||||||||  ||| |||||||||||||    
T  13010482 ctattgtaatcacaacctcacaataagttgtcaaagctgcaacaaatgtgcctttc 13010537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 18657052 - 18657304
Alignment:
Q  16 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 115  Q
    |||||||||||| ||||||||||||||| ||| |||| ||||| |||| |||||||  |||||||||||||| |||||||||||||||||||||| | ||    
T  18657052 acatcaaaagtaatgcgtgaagcatgggctaatgcttatcgtgcaagagcatgagcgctaccgtttgcttgacgcctagtaaaaacaactacaaattcgt 18657151  T
Q  116 tataatgatcaagtaaggttctacagttt-ggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatc 214  Q
    ||||||||| ||||||||||||||| ||| |||| || |||||||||||||||| |||| |||||||| ||| ||||||||| |||||||||||||||||    
T  18657152 tataatgattaagtaaggttctacaattttggatgatcgaaccatactcagagatattcatcttactaatgtacacatcatccacaaccattttacaatc 18657251  T
Q  215 aagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatgcctt 267  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  18657252 aagctcaaaaatgacattgtggtatcctaatgaagaaatccattgaatgcctt 18657304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 3230693 - 3230592
Alignment:
Q  16 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 115  Q
    |||||||||||| |  |||||||||||||||||| |  ||||| |||| ||||| |  |   |||||||||| ||||| |||||||||||||||||||||    
T  3230693 acatcaaaagtattatgtgaagcatgggataaggttgttcgtgcaagagcatgaacgctcttgtttgcttgatgcctaataaaaacaactacaaagttgt 3230594  T
Q  116 ta 117  Q
    ||    
T  3230593 ta 3230592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 20948649 - 20948498
Alignment:
Q  16 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaactacaaagttgt 115  Q
    ||||||||  || |||| |||||||||||||| ||| ||| || ||| ||||||||  |||||||||||||| |||||  ||||||||  |   | ||||    
T  20948649 acatcaaatataatgcgagaagcatgggataaagctgctcttgcaagtacatgagcgctaccgtttgcttgacgcctaacaaaaacaatcaagtaattgt 20948550  T
Q  116 tataatgatcaagtaaggttctacagt-ttggataattgaaccatactcaga 166  Q
    |||||  || |||||||||||| || | ||| ||||||||| ||||||||||    
T  20948549 tataagaattaagtaaggttctgcactgttgtataattgaatcatactcaga 20948498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 3230504 - 3230423
Alignment:
Q  186 tgcacatcatctacaaccattttacaatcaagctcaaaaataacattgtggtaccctaatgaagaaatccattgaatgcctt 267  Q
    ||||||||||||||||||||||||||||| | | ||||||| |  | |||||| || ||  ||||||| |||||||||||||    
T  3230504 tgcacatcatctacaaccattttacaatccaacacaaaaatcatctcgtggtatcccaagaaagaaatacattgaatgcctt 3230423  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 3230592 - 3230528
Alignment:
Q  88 agcctagtaaaaacaactacaaagttgttataatgatcaagtaaggttctac-agtttggataat 151  Q
    |||||| |||||||| ||||||||| |||||| ||||||||||| ||| ||| | ||||||||||    
T  3230592 agcctaataaaaacagctacaaagtcgttatagtgatcaagtaaagttgtacaattttggataat 3230528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 142 - 264
Target Start/End: Original strand, 913983 - 914105
Alignment:
Q  142 tttggataattgaaccatactcagagagattcttcttactattgtgcacatcatctacaaccattttacaatcaagctcaaaaataacattgtggtaccc 241  Q
    |||||||||| |||||||| ||| |||||||  ||| | | |||||||||||||||||||||||||||||||| | ||||||||| |  || ||||| ||    
T  913983 tttggataatcgaaccatattcaaagagattaatctaattgttgtgcacatcatctacaaccattttacaatccaactcaaaaatcatcttttggtatcc 914082  T
Q  242 taatgaagaaatccattgaatgc 264  Q
     ||  ||||||| ||||||||||    
T  914083 caagaaagaaatacattgaatgc 914105  T

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Target: scaffold0862 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 4512 - 4462
Alignment:
Q  268 ctattgtcatcacaacctcacaataagatgtcaaagcaacaataaatgtgc 318  Q
    ||||||||||||||||||| ||||||| ||| |||||| ||| ||||||||    
T  4512 ctattgtcatcacaacctcgcaataagttgttaaagcagcaacaaatgtgc 4462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 9680364 - 9680275
Alignment:
Q  16 acatcaaaagtactgcgtgaagcatgggataaggcttctcgtgaaagaacatgagcattaccgtttgcttgaagcctagtaaaaacaact 105  Q
    ||||||||| |||||| ||||||||| ||||| | | ||  || |||| |||||||  | |||||||||||| |||||||||| ||||||    
T  9680364 acatcaaaaatactgcttgaagcatgagataaagttgcttttgcaagagcatgagcgcttccgtttgcttgacgcctagtaaacacaact 9680275  T

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