View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_high_26 (Length: 238)
Name: NF11405_high_26
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48424517 - 48424739
Alignment:
| Q |
1 |
tgttttgccaaagttgaattcccaccaccaattgataaaagagttttcaccgaactactctttgcctggattgtttcagtgaaggttgagaaactagctg |
100 |
Q |
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| T |
48424517 |
tgttttgccaaagttgaattcccaccaccaattgataaaagagttttcaccgaactactctttgcctggattgtttcagtgaaggttgagaaactagctg |
48424616 |
T |
|
| Q |
101 |
cgtttgcagaagaaatagtgacttggttggtattagaatcaaggtcagcaaatgcacagaacaagtgtgtgaaataagagggatcaatgtcagaaactgc |
200 |
Q |
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| T |
48424617 |
cgtttgcagaagaaatagtgacttggttggtattagaatcaaggtcagcaaatgcacagaacaagtgtgtgaaataagagggatcaatgtcagaaactgc |
48424716 |
T |
|
| Q |
201 |
aaggccactatcagaataccaat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
48424717 |
aaggccactatcagaataccaat |
48424739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 51468125 - 51468326
Alignment:
| Q |
22 |
ccaccaccaattgataaaagagttttcaccgaactactctttgcctggattgtttcagtgaaggttgagaaactagctgcgtttgcagaagaaatagtga |
121 |
Q |
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|||||||||||||||||||| || ||||||||| ||||||||| ||| || ||||||||||||||||||||||||||||||| || ||||||||| |||| |
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| T |
51468125 |
ccaccaccaattgataaaagcgtcttcaccgaattactctttgactgaatggtttcagtgaaggttgagaaactagctgcgtgtgtagaagaaatggtga |
51468224 |
T |
|
| Q |
122 |
cttggttggtattagaatcaaggtcagcaaatgcacagaacaagtgtgtgaaataagagggatcaatgtcagaaactgcaaggccactatcagaatacca |
221 |
Q |
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| T |
51468225 |
cttggttggtattagaatcaaggtcagcaaatgcacagaacaagtgggtgaaataagagggatcaatgtcagaaactgcaaggtcactatcagaatacca |
51468324 |
T |
|
| Q |
222 |
at |
223 |
Q |
| |
|
|| |
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| T |
51468325 |
at |
51468326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 51457821 - 51458012
Alignment:
| Q |
32 |
ttgataaaagagttttcaccgaactactctttgcctggattgtttcagtgaaggttgagaaactagctgcgtttgcagaagaaatagtgacttggttggt |
131 |
Q |
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|||||||||| |||||||| |||| |||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
51457821 |
ttgataaaagggttttcactgaacgactctttgcctgaatggtttcagtgaaggttgagaaactagctgcgattgcagaagaaatggtgacttggttggt |
51457920 |
T |
|
| Q |
132 |
attagaatcaaggtcagcaaatgcacagaacaagtgtgtgaaataagagggatcaatgtcagaaactgcaaggccactatcagaataccaat |
223 |
Q |
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| T |
51457921 |
attagaatcaaggtctgcaaatgcacaaaacaagtgggtgaaataagagggatcaatgtcagaaactgcaaggccactatcagaataccaat |
51458012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 51483031 - 51483233
Alignment:
| Q |
21 |
cccaccaccaattgataaaagagttttcaccgaactactctttgcctggattgtttcagtgaaggttgagaaactagctgcgtttgcagaagaaatagtg |
120 |
Q |
| |
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||||||||||||||||| ||| |||||||| |||||||| |||||||| | |||| |||||||||||||| || ||||||||||||| |||||| ||| |
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| T |
51483031 |
cccaccaccaattgatagaagggttttcactgaactactttttgcctgaacagtttgggtgaaggttgagaatcttgctgcgtttgcaggagaaatggtg |
51483130 |
T |
|
| Q |
121 |
acttggttggtattagaatcaaggtcagcaaatgcacagaacaagtgtgtgaaataagagggatcaatgtcagaaactgcaaggccactatcagaatacc |
220 |
Q |
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|||||||||||| || ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
51483131 |
acttggttggtagcagtatcaaggtcagcaaatgcacaaaacaagtgggtgaaataagagggatcaatatcagaagctgcaaggccactatcagaatacc |
51483230 |
T |
|
| Q |
221 |
aat |
223 |
Q |
| |
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||| |
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|
| T |
51483231 |
aat |
51483233 |
T |
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