View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11405_high_27 (Length: 235)
Name: NF11405_high_27
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 35430125 - 35429900
Alignment:
| Q |
2 |
tactctctaattcagataatctatacagggaaaaaagtaacataattgaacaattttaaagcatggaaatttgagttnnnnnnntaacaagaataagaac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35430125 |
tactctctaattcagataatctatacagggaaaaaagtaacataattgaacaattttaaagcatggaaatttgagttaaaaaaataacaagaataagaac |
35430026 |
T |
|
| Q |
102 |
tttataac---ttattttaatacgcg--aannnnnnnnnaatcaacaagaagtgcgattgcagaaaaatacaaacaaaaaagagccaaagaataactaga |
196 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35430025 |
tttataactaattattttaatacgcgatattttttttttaatcaacaagaagtgcgattgcagaaaaatacaaacaaaaaagagccaaagaataactaga |
35429926 |
T |
|
| Q |
197 |
atcagtggctctcaccacaataatac |
222 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
35429925 |
atcagtggctctcaccacaataatac |
35429900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 35420845 - 35420761
Alignment:
| Q |
138 |
tcaacaagaagtgcgattgcagaaaaatacaaacaaaaaagagccaaagaataactagaatcagtggctctcaccacaataatac |
222 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35420845 |
tcaacaagaagtgcgattgcagaaacatacaaacaaaaaagagccaaagaataactagaatcagtggctctcaccacaataatac |
35420761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University