View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11405_high_3 (Length: 745)

Name: NF11405_high_3
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11405_high_3
NF11405_high_3
[»] chr4 (8 HSPs)
chr4 (1-635)||(54004290-54004916)
chr4 (1-397)||(53988610-53988995)
chr4 (676-727)||(54004211-54004262)
chr4 (6-83)||(8418258-8418336)
chr4 (10-86)||(17467935-17468012)
chr4 (32-85)||(24177997-24178050)
chr4 (2-86)||(28495428-28495513)
chr4 (40-77)||(47109766-47109803)
[»] chr3 (6 HSPs)
chr3 (2-87)||(29383057-29383143)
chr3 (2-86)||(16776795-16776880)
chr3 (40-86)||(15095242-15095289)
chr3 (6-87)||(20113325-20113408)
chr3 (10-87)||(12918754-12918832)
chr3 (2-87)||(35938408-35938490)
[»] chr5 (5 HSPs)
chr5 (2-87)||(26699360-26699445)
chr5 (2-87)||(26969093-26969178)
chr5 (6-87)||(30117156-30117238)
chr5 (5-86)||(37700137-37700219)
chr5 (40-87)||(39971057-39971105)
[»] chr1 (8 HSPs)
chr1 (2-87)||(5966616-5966702)
chr1 (9-87)||(50074453-50074532)
chr1 (2-87)||(26768428-26768514)
chr1 (2-66)||(15624804-15624868)
chr1 (10-87)||(4389652-4389730)
chr1 (32-84)||(35693108-35693161)
chr1 (32-66)||(4371702-4371736)
chr1 (2-87)||(46083910-46083995)
[»] scaffold0280 (1 HSPs)
scaffold0280 (2-67)||(270-335)
[»] chr2 (8 HSPs)
chr2 (2-86)||(4897651-4897736)
chr2 (2-86)||(4945045-4945130)
chr2 (2-86)||(12296337-12296422)
chr2 (6-87)||(12969554-12969636)
chr2 (2-66)||(27725601-27725665)
chr2 (10-65)||(21522929-21522984)
chr2 (32-67)||(26273494-26273529)
chr2 (7-60)||(14493726-14493779)
[»] chr7 (7 HSPs)
chr7 (2-65)||(28017009-28017072)
chr7 (2-87)||(18312232-18312318)
chr7 (37-86)||(20307481-20307530)
chr7 (10-87)||(30534748-30534826)
chr7 (10-87)||(32964311-32964389)
chr7 (33-87)||(47534843-47534897)
chr7 (6-86)||(2087201-2087282)
[»] chr8 (4 HSPs)
chr8 (6-87)||(30734688-30734770)
chr8 (2-81)||(24260862-24260942)
chr8 (2-67)||(30512831-30512897)
chr8 (32-67)||(19701167-19701202)
[»] scaffold0074 (1 HSPs)
scaffold0074 (11-66)||(55993-56048)
[»] chr6 (2 HSPs)
chr6 (2-65)||(8646113-8646176)
chr6 (10-87)||(6418568-6418646)
[»] scaffold0072 (1 HSPs)
scaffold0072 (10-60)||(47226-47276)


Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 635
Target Start/End: Complemental strand, 54004916 - 54004290
Alignment:
Q  1 taaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaacnnnnnnn-aaa 98  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||        |||    
T  54004916 taaagatataaaataaataggagaatattaataaataattaattaatgtacttgaaaatatcaaaagaatattgtaaaaagagacaaacttttttttaaa 54004817  T
Q  99 atggacttatatttaaagaactgtttgatggacttttgccct-ttttgtnnnnnnntaataa-taactgttcgaaaaatctggagggtctgtgagcaaag 196  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||||        || || |||||||||||||||||||||||||||||||||||||    
T  54004816 atggatttatatttaaagaactgtttgatgcacttttgccctcttttgtaaaaaaaaaaaaaataactgttcgaaaaatctggagggtctgtgagcaaag 54004717  T
Q  197 aagggggtcaggaaagtaataagcaccaaacatggctgattgggctgcatgcatgggcatgggcatgggtattcagaaaacgaatttgacacgtgacagt 296  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||            ||||||||||| |||||||||||||||||||    
T  54004716 aagggggtcaggaaagtaataagcaccaaacatggccgattgggctgcatgcatggg------------tattcagaaaatgaatttgacacgtgacagt 54004629  T
Q  297 agcggttacctcaaaacggacacgtgtgtcgtttgtaaaccgccaacaaaacaaacaaaacaacgttgtccatacctttttcctagacttctccaaatct 396  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54004628 agcggtaacctcaaaacggacacgtgtgtcgtttgtaaaccgccaacaaaacaaacaaaacaactttgtccatacctttttcctagacttctccaaatct 54004529  T
Q  397 tgtgcattttggtcggattcaaagaaattgaagaaaatggataacagaaatcatcgtttaagagttcaaaacaagaaaccaattaagcgcagcggaaaga 496  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004528 tgtgcattttggtcggattcaaagaaaaagaagaaaatggataacagaaatcatcgtttaagagttcaaaacaagaaaccaattaagcgcagcggaaaga 54004429  T
Q  497 aaccattggtgaagaagtttttggattatcttaagtctgatacttttttgtatgctcctcttctttctcctcaaccctccggctctggttttccatcacc 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004428 aaccattggtgaagaagtttttggattatcttaagtctgatacttttttgtatgctcctcttctttctcctcaaccctccggctctggttttccatcacc 54004329  T
Q  597 caacaacttcaaaggtttcaaattcaaactcactaatca 635  Q
    |||||||||||||||||||||||||||||||||||||||    
T  54004328 caacaacttcaaaggtttcaaattcaaactcactaatca 54004290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 53988610 - 53988995
Alignment:
Q  1 taaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaacnnnnnnn-aaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||        |||    
T  53988610 taaagatataaaataaataggagaatattgataaataattaattaatgtgcttgaaaatatcaaaaggatattgtaaaaagagacaaacttttttttaaa 53988709  T
Q  99 atggacttatatttaaagaactgtttgatggacttttgccct-ttttgtnnnnnnntaataataactgttcgaaaaatctggagggtctgtgagcaaaga 197  Q
    |||||||||||||||||||||||||||||| ||||||| ||| ||||||        |  ||||||||||||||||||||||||||||||||||||||||    
T  53988710 atggacttatatttaaagaactgtttgatgcacttttgtcctcttttgtaaaaaaaaacaaataactgttcgaaaaatctggagggtctgtgagcaaaga 53988809  T
Q  198 agggggtcaggaaagtaataagcaccaaacatggctgattgggctgcatgcatgggcatgggcatgggtattcagaaaacgaatttgacacgtgacagta 297  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||            ||||||||||| ||||||||||||||||||||    
T  53988810 agggggtcaggaaagtaataagcaccaaacatggccgattgggctgcatgcatggg------------tattcagaaaatgaatttgacacgtgacagta 53988897  T
Q  298 gcggttacctcaaaacggacacgtgtgtcgtttgtaaaccgccaacaaaacaaacaaaacaacgttgtccatacctttttcctagacttctccaaatctt 397  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53988898 gcggtaacctcaaaacggacacgtgt--cgtttgtaaaccgccaacaaaacaaacaaaacaacgttgtccatacctttttcctagacttctccaaatctt 53988995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 676 - 727
Target Start/End: Complemental strand, 54004262 - 54004211
Alignment:
Q  676 atgaggtgttaatttgtttatgatcacagtggtggagctgaaaagacctata 727  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54004262 atgaggtgttaatttgtttatgatcacagtggtggagctgaaaagacctata 54004211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 8418258 - 8418336
Alignment:
Q  6 atataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagaga 83  Q
    |||||||||||||||| | || ||| |||| |||||||||||||||||||||||| |||| ||||||| ||||||||||    
T  8418258 atataaaataaataggggtatgttggtaaagaattaattaatgtacttgaaaataccaaatggatcttataaaaagaga 8418336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 17468012 - 17467935
Alignment:
Q  10 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaa 86  Q
    |||||||||| | | || ||| |||| || ||||||||||||||||||||| |||| ||||||| ||||||| |||||    
T  17468012 aaaataaataagggtatgttggtaaagaaataattaatgtacttgaaaataccaaagggatcttataaaaagggacaa 17467935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 24177997 - 24178050
Alignment:
Q  32 taaataattaattaatgtacttgaaaatatcaaaggatcttgtaaaaagagaca 85  Q
    ||||||| ||||||||| |||||||||||||||| | |||| ||||||| ||||    
T  24177997 taaataaataattaatgcacttgaaaatatcaaaaggtcttataaaaagggaca 24178050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 28495513 - 28495428
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatca-aaggatcttgtaaaaagagacaa 86  Q
    |||||| ||||||||||||| | || ||| ||||||| ||||||||| ||||| ||||| || | ||||||| ||||||| |||||    
T  28495513 aaagatgtaaaataaataggggtatgttggtaaataaataattaatgaacttggaaataccagatggatcttataaaaagggacaa 28495428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 47109766 - 47109803
Alignment:
Q  40 taattaatgtacttgaaaatatcaaaggatcttgtaaa 77  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  47109766 taattaatgtacttgaaaataccaaaggatcttataaa 47109803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 29383143 - 29383057
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaa 87  Q
    |||||||||||||||||| | | || ||| |||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  29383143 aaagatataaaataaataagggtatgttggtaaagaattaattaatgtacttgaaaatatcaaagggatcttataaaaagagacaaa 29383057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 16776795 - 16776880
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaa 86  Q
    |||||||||||||||||||| | |||||| |||| |||||||||||||||||| ||||| |||| || |||| |||||||||||||    
T  16776795 aaagatataaaataaataggggtatattggtaaagaattaattaatgtacttggaaatagcaaaggggtcttataaaaagagacaa 16776880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 15095289 - 15095242
Alignment:
Q  40 taattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaa 86  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||    
T  15095289 taattaatgtacttgaaaatatcaaagggatcttataaaaagggacaa 15095242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 20113325 - 20113408
Alignment:
Q  6 atataaaataaataggagaatattgataaataa-ttaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaaa 87  Q
    |||||||||||||||| |  ||||| |||| || |||| ||||||||||  ||||||||||| |||||| ||||||||||||||    
T  20113325 atataaaataaataggggtgtattggtaaaaaaattaagtaatgtactttgaaatatcaaagagatcttataaaaagagacaaa 20113408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 12918754 - 12918832
Alignment:
Q  10 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatc-aaaggatcttgtaaaaagagacaaa 87  Q
    |||||||||| | | || ||| |||| || ||||||||||||||||||||| | |||||||||| ||||||| ||||||    
T  12918754 aaaataaataagggtatgttggtaaagaaataattaatgtacttgaaaataccaaaaggatcttataaaaagggacaaa 12918832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 35938490 - 35938408
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatc-aaaggatcttgtaaaaagagacaaa 87  Q
    |||||||||||||||||||| |  | ||| ||||||||    ||||||| ||||||||||| |||| ||||| ||||||||||||||    
T  35938490 aaagatataaaataaataggggtgtgttggtaaataat----taatgtatttgaaaatatcaaaagaatcttataaaaagagacaaa 35938408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 26699445 - 26699360
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaaggatcttgtaaaaagagacaaa 87  Q
    ||||||| |||||||||||| | ||||||||||||||||||||||| |||||  |||||||||||  | || ||||||||||||||    
T  26699445 aaagatagaaaataaataggggtatattgataaataattaattaatatacttcgaaatatcaaagagttttataaaaagagacaaa 26699360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 26969178 - 26969093
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaaggatcttgtaaaaagagacaaa 87  Q
    ||||||| |||||||||||| | ||||||||||||||||||||||| |||||  |||||||||||  | || ||||||||||||||    
T  26969178 aaagatagaaaataaataggggtatattgataaataattaattaatatacttcgaaatatcaaagagttttataaaaagagacaaa 26969093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 30117238 - 30117156
Alignment:
Q  6 atataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 87  Q
    |||||||||||||||  |  | ||| |||| |||||||||||||||||  ||||||||||||| |||| ||||||||||||||    
T  30117238 atataaaataaatagaggtttgttggtaaagaattaattaatgtacttacaaatatcaaaggagtcttataaaaagagacaaa 30117156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 37700219 - 37700137
Alignment:
Q  5 gatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaa 86  Q
    |||||||||||||||||   || ||| |||| |||||||||||||||| | ||||||||||||| |||| |||||||| ||||    
T  37700219 gatataaaataaatagggatatgttggtaaagaattaattaatgtactcggaaatatcaaaggagtcttataaaaagaaacaa 37700137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 39971105 - 39971057
Alignment:
Q  40 taattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaa 87  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  39971105 taattaatgtacttgaaaatatcaaagggatcttataaaaagggacaaa 39971057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 5966702 - 5966616
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaa 87  Q
    |||||||||||||||||| | | ||||||||||  | |||||||| |||||||||||||||||| | ||||| ||||||||||||||    
T  5966702 aaagatataaaataaataagggtatattgataatgagttaattaacgtacttgaaaatatcaaatgaatcttataaaaagagacaaa 5966616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 50074532 - 50074453
Alignment:
Q  9 taaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 87  Q
    ||||||||||||||| || ||| |||| |||||||||||||||||| ||||| ||||| | |||| ||||||||||||||    
T  50074532 taaaataaataggagtatgttggtaaagaattaattaatgtacttggaaataccaaagaagtcttataaaaagagacaaa 50074453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 26768514 - 26768428
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaa 87  Q
    |||||||||||||||||||| | || ||| |||| |||||||||||||||||  |||||  ||| ||||||| ||||||||||||||    
T  26768514 aaagatataaaataaataggggtatgttggtaaagaattaattaatgtacttagaaatacaaaagggatcttataaaaagagacaaa 26768428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 15624804 - 15624868
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag 66  Q
    |||||||||||||||||||  | || ||| |||| |||||||||||||||||||||||| |||||    
T  15624804 aaagatataaaataaatagaggtatgttggtaaagaattaattaatgtacttgaaaataccaaag 15624868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 4389730 - 4389652
Alignment:
Q  10 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaaa 87  Q
    |||||||||| ||| |  ||| |||| || ||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  4389730 aaaataaataagagtaggttggtaaagaaataattaatgtacttggaaatatcaaagagatcttataaaaagagacaaa 4389652  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 35693161 - 35693108
Alignment:
Q  32 taaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagac 84  Q
    |||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  35693161 taaaaaattaattaatgtgcttgaaaatatcaaagggatcttataaaaagagac 35693108  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 4371702 - 4371736
Alignment:
Q  32 taaataattaattaatgtacttgaaaatatcaaag 66  Q
    ||||||| |||||||||||||||||||||||||||    
T  4371702 taaataaataattaatgtacttgaaaatatcaaag 4371736  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 46083995 - 46083910
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 87  Q
    ||||||||||||||||| || | |||||| |||| | |||||||||||  |||||||||||||| ||  ||| ||||||||||||||    
T  46083995 aaagatataaaataaatggg-gtatattggtaaaaagttaattaatgtgtttgaaaatatcaaatgaggcttataaaaagagacaaa 46083910  T

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Target: scaffold0280 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 270 - 335
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagg 67  Q
    |||||||||||||||||| ||| || ||| |||||||||||||||||||| |||||||||| ||||    
T  270 aaagatataaaataaatatgagtatgttggtaaataattaattaatgtacatgaaaatatctaagg 335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 4897651 - 4897736
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaa 86  Q
    |||||||||||||||||||| | || ||| |||| |||||||||||||||||  ||||||||||| | |||| |||||||||||||    
T  4897651 aaagatataaaataaataggggtatgttggtaaagaattaattaatgtacttcgaaatatcaaagaggtcttataaaaagagacaa 4897736  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 4945045 - 4945130
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaa 86  Q
    |||||||||||||||||||| | || ||| |||| |||||||||||||||||  ||||||||||| | |||| |||||||||||||    
T  4945045 aaagatataaaataaataggggtatgttggtaaagaattaattaatgtacttcgaaatatcaaagaggtcttataaaaagagacaa 4945130  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 12296337 - 12296422
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaa 86  Q
    |||||||||||||||||||| | || ||| |||| |||||||||||||||||| |||||||||||   |||| |||||||||||||    
T  12296337 aaagatataaaataaataggggtatgttggtaaagaattaattaatgtacttggaaatatcaaagatgtcttataaaaagagacaa 12296422  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 12969636 - 12969554
Alignment:
Q  6 atataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaagagacaaa 87  Q
    |||||||||||||||| | || ||| |||| ||||||||||| || ||||||||| |||| || |||| ||||||||||||||    
T  12969636 atataaaataaataggggtatgttggtaaagaattaattaatatatttgaaaataacaaaggggtcttataaaaagagacaaa 12969554  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 27725601 - 27725665
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag 66  Q
    |||||| ||||||||||| | | | ||||||||| || |||||||||||||| ||||||||||||    
T  27725601 aaagatgtaaaataaataagggtagattgataaagaaataattaatgtacttaaaaatatcaaag 27725665  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 21522929 - 21522984
Alignment:
Q  10 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa 65  Q
    |||||||||| | | || ||||||||||| ||||||||||| ||||||||||||||    
T  21522929 aaaataaataagggtatgttgataaataaataattaatgtaattgaaaatatcaaa 21522984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 26273494 - 26273529
Alignment:
Q  32 taaataattaattaatgtacttgaaaatatcaaagg 67  Q
    |||| |||||||||||||||||||||||||||||||    
T  26273494 taaagaattaattaatgtacttgaaaatatcaaagg 26273529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 14493726 - 14493779
Alignment:
Q  7 tataaaataaataggagaatattgataaataattaattaatgtacttgaaaata 60  Q
    ||||||||||||||| | || ||| |||| |||||||||||||| |||||||||    
T  14493726 tataaaataaataggggtatgttggtaaagaattaattaatgtatttgaaaata 14493779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 28017072 - 28017009
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa 65  Q
    |||||||||||||||||||| |  ||||||| || |||||||||||||||||||||||| ||||    
T  28017072 aaagatataaaataaataggggtgtattgatcaagaattaattaatgtacttgaaaataccaaa 28017009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 18312318 - 18312232
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatc-aaaggatcttgtaaaaagagacaaa 87  Q
    ||||||||||||||||||| |  || ||| |||| |||||||||||||| ||||||||||| |||| ||||| |||||||| |||||    
T  18312318 aaagatataaaataaatagaaatatgttggtaaaaaattaattaatgtatttgaaaatatcaaaagtatcttataaaaagaaacaaa 18312232  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 20307481 - 20307530
Alignment:
Q  37 aattaattaatgtacttgaaaatatcaaaggatcttgtaaaaagagacaa 86  Q
    |||||||||||||| |||||||||||| |||||||| |||||||||||||    
T  20307481 aattaattaatgtatttgaaaatatcacaggatcttataaaaagagacaa 20307530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 30534826 - 30534748
Alignment:
Q  10 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 87  Q
    |||||||||| | | || ||| |||| || ||||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  30534826 aaaataaataagggtatgttggtaaagaaataattaatgtacttgaaaatatcaaaggagtcttataaaaagggacaaa 30534748  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 32964311 - 32964389
Alignment:
Q  10 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 87  Q
    |||||||||| | | || ||| |||| || ||||||||||||||||||||| ||||||| |||| ||||||| ||||||    
T  32964311 aaaataaataagggtatgttggtaaagaaataattaatgtacttgaaaataccaaaggactcttataaaaagggacaaa 32964389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 47534843 - 47534897
Alignment:
Q  33 aaataattaattaatgtacttgaaaatatcaaaggatcttgtaaaaagagacaaa 87  Q
    |||||||||||||||||| ||||||||| |||||| | || ||||||| ||||||    
T  47534843 aaataattaattaatgtagttgaaaatagcaaagggttttataaaaagggacaaa 47534897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 2087201 - 2087282
Alignment:
Q  6 atataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaa 86  Q
    |||||||||||||| | |  | ||| |||| ||||||||||||||||||||||||  ||||   ||||||||||||||||||    
T  2087201 atataaaataaataagggtgtgttggtaaaaaattaattaatgtacttgaaaatactaaagatgtcttgtaaaaagagacaa 2087282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 30734688 - 30734770
Alignment:
Q  6 atataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaagga-tcttgtaaaaagagacaaa 87  Q
    |||||||||||||||| |  |||||||||| | ||||||| ||||||||||||||||||| || |||| ||||||| ||||||    
T  30734688 atataaaataaataggggtgtattgataaagagttaattactgtacttgaaaatatcaaatgagtcttataaaaagtgacaaa 30734770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 24260862 - 24260942
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa-ggatcttgtaaaaaga 81  Q
    |||||||||||||||||| | | || ||| |||| |||||||||||| ||||| |||||||||| ||||||| ||||||||    
T  24260862 aaagatataaaataaataagggtatgttggtaaaaaattaattaatgcacttggaaatatcaaagggatcttataaaaaga 24260942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 30512897 - 30512831
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataa-ttaattaatgtacttgaaaatatcaaagg 67  Q
    |||||||||||||||||||| | || ||| |||| || |||||||||||||||||||||| ||||||    
T  30512897 aaagatataaaataaataggggtatgttggtaaaaaaattaattaatgtacttgaaaataccaaagg 30512831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 19701167 - 19701202
Alignment:
Q  32 taaataattaattaatgtacttgaaaatatcaaagg 67  Q
    |||| |||||||||||||||||||||||||||||||    
T  19701167 taaagaattaattaatgtacttgaaaatatcaaagg 19701202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 56048 - 55993
Alignment:
Q  11 aaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag 66  Q
    ||||||||||||| || |||||||| ||||||| |||||||||||||||| |||||    
T  56048 aaataaataggagtatgttgataaagaattaataaatgtacttgaaaataccaaag 55993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 8646113 - 8646176
Alignment:
Q  2 aaagatataaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaa 65  Q
    |||||||||||||||||||| | ||  || |||| |||||||||||||||||| ||||| ||||    
T  8646113 aaagatataaaataaataggggtatggtggtaaaaaattaattaatgtacttggaaatagcaaa 8646176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 6418568 - 6418646
Alignment:
Q  10 aaaataaataggagaatattgataaataattaattaatgtacttgaaaatatcaaag-gatcttgtaaaaagagacaaa 87  Q
    |||||||||| | | || ||| |||| || ||||||||||||||||||||||||||| | |||| ||||||| ||||||    
T  6418568 aaaataaataagggtatgttggtaaagaaataattaatgtacttgaaaatatcaaagaggtcttataaaaagggacaaa 6418646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 47276 - 47226
Alignment:
Q  10 aaaataaataggagaatattgataaataattaattaatgtacttgaaaata 60  Q
    |||||||||||||| || ||| |||| ||||||| ||||||||||||||||    
T  47276 aaaataaataggagtatgttggtaaagaattaataaatgtacttgaaaata 47226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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