View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11405_high_5 (Length: 503)

Name: NF11405_high_5
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11405_high_5
NF11405_high_5
[»] chr3 (19 HSPs)
chr3 (18-480)||(50237675-50238122)
chr3 (43-102)||(29475843-29475902)
chr3 (38-107)||(29601043-29601113)
chr3 (38-96)||(55244441-55244499)
chr3 (18-83)||(11284164-11284229)
chr3 (18-102)||(43308719-43308803)
chr3 (38-102)||(45289152-45289216)
chr3 (38-102)||(45493753-45493817)
chr3 (18-102)||(46431720-46431804)
chr3 (38-102)||(49841773-49841837)
chr3 (38-103)||(36304122-36304187)
chr3 (38-102)||(42026597-42026661)
chr3 (38-102)||(47804724-47804788)
chr3 (39-102)||(40116530-40116593)
chr3 (38-103)||(19758043-19758108)
chr3 (38-102)||(388323-388387)
chr3 (38-74)||(31337621-31337657)
chr3 (38-102)||(39600742-39600806)
chr3 (38-98)||(40116399-40116459)
[»] chr1 (25 HSPs)
chr1 (359-480)||(17279796-17279917)
chr1 (38-130)||(17233832-17233925)
chr1 (38-129)||(13827641-13827735)
chr1 (38-102)||(3818917-3818981)
chr1 (38-102)||(10569132-10569196)
chr1 (18-98)||(42501269-42501349)
chr1 (38-130)||(43375659-43375753)
chr1 (38-105)||(50636235-50636302)
chr1 (18-98)||(38869043-38869123)
chr1 (38-102)||(40416528-40416592)
chr1 (38-83)||(40920590-40920635)
chr1 (40-100)||(6025764-6025824)
chr1 (38-102)||(8342942-8343006)
chr1 (38-102)||(8796366-8796430)
chr1 (38-102)||(15577575-15577639)
chr1 (48-103)||(10584968-10585023)
chr1 (39-102)||(30834039-30834102)
chr1 (41-103)||(4590596-4590658)
chr1 (40-101)||(25460182-25460242)
chr1 (38-102)||(29577204-29577267)
chr1 (38-102)||(30396790-30396854)
chr1 (38-102)||(33560919-33560983)
chr1 (57-97)||(43423881-43423921)
chr1 (38-102)||(52532677-52532741)
chr1 (41-105)||(52633236-52633300)
[»] chr8 (22 HSPs)
chr8 (38-136)||(41971851-41971950)
chr8 (39-102)||(16917340-16917403)
chr8 (37-102)||(36069759-36069824)
chr8 (40-103)||(10079970-10080033)
chr8 (38-83)||(3638394-3638439)
chr8 (41-98)||(35643670-35643727)
chr8 (18-102)||(79184-79268)
chr8 (38-102)||(27037792-27037856)
chr8 (18-93)||(1549432-1549507)
chr8 (65-102)||(16994532-16994569)
chr8 (41-102)||(23492191-23492252)
chr8 (38-102)||(490492-490556)
chr8 (38-102)||(10108970-10109034)
chr8 (38-102)||(11733904-11733968)
chr8 (38-102)||(17491715-17491779)
chr8 (38-102)||(24399850-24399914)
chr8 (38-102)||(29520806-29520870)
chr8 (38-102)||(30559850-30559914)
chr8 (38-102)||(35362711-35362775)
chr8 (38-102)||(38391954-38392018)
chr8 (58-102)||(39388940-39388984)
chr8 (38-102)||(39967560-39967624)
[»] chr6 (13 HSPs)
chr6 (18-102)||(1747986-1748070)
chr6 (38-102)||(35199684-35199747)
chr6 (38-102)||(34566-34630)
chr6 (38-102)||(24665968-24666032)
chr6 (38-67)||(586042-586071)
chr6 (46-91)||(5053694-5053739)
chr6 (39-84)||(10422768-10422813)
chr6 (43-103)||(18238210-18238271)
chr6 (38-79)||(32945428-32945469)
chr6 (38-83)||(33997605-33997650)
chr6 (38-102)||(6293453-6293517)
chr6 (38-102)||(8364713-8364777)
chr6 (38-102)||(9593769-9593833)
[»] chr4 (26 HSPs)
chr4 (38-102)||(37042725-37042789)
chr4 (18-99)||(41192221-41192302)
chr4 (38-102)||(42639081-42639145)
chr4 (38-102)||(47372808-47372872)
chr4 (39-101)||(25574982-25575044)
chr4 (18-103)||(40018230-40018315)
chr4 (18-102)||(7681951-7682035)
chr4 (38-102)||(30621262-30621326)
chr4 (38-100)||(6843774-6843836)
chr4 (38-103)||(31403095-31403160)
chr4 (37-102)||(42293325-42293390)
chr4 (38-102)||(47147530-47147592)
chr4 (38-102)||(26024911-26024975)
chr4 (38-98)||(55007907-55007967)
chr4 (38-81)||(29209236-29209279)
chr4 (38-131)||(31339650-31339745)
chr4 (38-101)||(44384988-44385051)
chr4 (38-95)||(22420778-22420835)
chr4 (65-102)||(28351716-28351753)
chr4 (18-103)||(32339715-32339800)
chr4 (18-83)||(54470383-54470448)
chr4 (38-102)||(934492-934556)
chr4 (38-102)||(45204900-45204964)
chr4 (38-102)||(53540447-53540511)
chr4 (39-99)||(55388273-55388333)
chr4 (38-102)||(56439632-56439696)
[»] chr2 (28 HSPs)
chr2 (38-102)||(42149721-42149785)
chr2 (18-102)||(8197582-8197666)
chr2 (18-102)||(8202342-8202426)
chr2 (38-102)||(19336954-19337018)
chr2 (39-102)||(26784402-26784465)
chr2 (38-99)||(37452287-37452348)
chr2 (38-102)||(19855619-19855683)
chr2 (39-102)||(19235046-19235109)
chr2 (40-103)||(45077883-45077948)
chr2 (45-129)||(11412837-11412921)
chr2 (38-83)||(32402676-32402721)
chr2 (38-102)||(33504380-33504445)
chr2 (38-102)||(2377210-2377274)
chr2 (38-129)||(7615399-7615490)
chr2 (38-102)||(9496023-9496087)
chr2 (38-102)||(12141701-12141765)
chr2 (38-102)||(31254445-31254509)
chr2 (38-102)||(33287578-33287642)
chr2 (38-102)||(33625259-33625323)
chr2 (38-102)||(37470194-37470258)
chr2 (39-102)||(1626352-1626415)
chr2 (38-97)||(6219127-6219186)
chr2 (57-102)||(12026085-12026130)
chr2 (43-104)||(42582504-42582565)
chr2 (38-102)||(9556430-9556494)
chr2 (66-102)||(26670925-26670961)
chr2 (38-102)||(37481678-37481742)
chr2 (38-102)||(38435109-38435173)
[»] chr7 (19 HSPs)
chr7 (40-129)||(28542007-28542097)
chr7 (42-102)||(28858202-28858262)
chr7 (37-101)||(1569174-1569238)
chr7 (46-102)||(12966173-12966229)
chr7 (38-129)||(36101838-36101930)
chr7 (38-129)||(5418197-5418287)
chr7 (43-102)||(24549754-24549813)
chr7 (46-100)||(36193736-36193790)
chr7 (38-103)||(27893624-27893689)
chr7 (38-102)||(28627994-28628058)
chr7 (38-102)||(37976392-37976456)
chr7 (38-96)||(30200025-30200083)
chr7 (57-102)||(29653626-29653671)
chr7 (37-102)||(40169812-40169877)
chr7 (42-103)||(41578188-41578249)
chr7 (18-74)||(6807389-6807445)
chr7 (38-102)||(22174157-22174221)
chr7 (38-102)||(35922410-35922474)
chr7 (38-102)||(40139009-40139073)
[»] chr5 (11 HSPs)
chr5 (38-102)||(12576921-12576985)
chr5 (38-102)||(9235204-9235268)
chr5 (57-102)||(28186855-28186900)
chr5 (37-102)||(37918189-37918254)
chr5 (57-102)||(43475396-43475441)
chr5 (38-91)||(43557894-43557947)
chr5 (38-102)||(35615440-35615504)
chr5 (38-102)||(38684637-38684701)
chr5 (57-103)||(39322146-39322192)
chr5 (38-83)||(18350963-18351008)
chr5 (39-103)||(28005691-28005755)
[»] scaffold0373 (1 HSPs)
scaffold0373 (38-100)||(2362-2424)
[»] scaffold0180 (1 HSPs)
scaffold0180 (18-103)||(25484-25570)
[»] scaffold0010 (1 HSPs)
scaffold0010 (38-102)||(160385-160449)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 50237675 - 50238122
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttttctaggttctactct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50237675 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttttctaggttctactct 50237774  T
Q  118 gcctctagtgattggactagccgtaatccagtacaagtacatatgaac--tccttt---tgattttgtttcatacnnnnnnntacaagcagaagcaagaa 212  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||   |  |||   ||||||||||||||||       ||||||||||||||||||    
T  50237775 gcctctagtgattggactagccgtaatccagtacaagtaaatatgaatcataatttgtctgattttgtttcatacaaaaaaatacaagcagaagcaagaa 50237874  T
Q  213 ataaaaatttcctttcatgagcattttaaggttttgattcctgtataaagactttggtggaactagaagttgattaaagcaattatggtattgtgctatg 312  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||             
T  50237875 ataaaaatttcctttcatgagcattttaaggttttgattcctctataaagactttggtggaagtagaagttgattaaagcaattatggtat--------- 50237965  T
Q  313 aatgaatgaatgaatagatgaaaatataaaacattgattgatgttatacctgcatacaagtctcatcccaatcgtgaccaaaacggatgacaacgagacg 412  Q
               ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50237966 -----------gaatagatttaaatataaaacattgattgatgttatacctgcatacaagtctcatcccaatcgtgaccaaaacggatgacaacgagacg 50238054  T
Q  413 ttcctcctcagcaaggattgcctgatcaacagcccatcccgaatgcaagtgaggcagcatgtacgaca 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50238055 ttcctcctcagcaaggattgcctgatcaacagcccatcccgaatgcaagtgaggcagcatgtacgaca 50238122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 29475902 - 29475843
Alignment:
Q  43 ttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||| |||||||||| |||||||||| ||||||||  |||||||||||||||||    
T  29475902 ttctatcataaacaatatttcaatccaactcattaatctctagatctttcttaatagttt 29475843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 29601113 - 29601043
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatag-ttttctag 107  Q
    ||||||||||||||| || ||||||  |||||||||| |||||||| ||||||||||||||| ||||||||    
T  29601113 taatgttctatcataaactatatttgaatccaactcattaatctctaaatctttcttaatagcttttctag 29601043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 55244499 - 55244441
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaa 96  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||  || ||||||||    
T  55244499 taatgttctatcatataccatatttctatccaactcattaatctctagatttttcttaa 55244441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 11284229 - 11284164
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctct 83  Q
    ||||||||||||||  ||| |||||||| ||||||||| |||||| ||||||||||| ||||||||    
T  11284229 acatggatcaaacgatgcaataatgttcaatcatataccatatttatatccaactcattaatctct 11284164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 43308803 - 43308719
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||| ||| ||| | |||||||||||||||  |||| ||||||||||| | ||||||||  || ||||||||||||||    
T  43308803 acatggatcaaccggcgcaattatgttctatcatatatcatatctctatccaactgattaatctctagatttttcttaatagttt 43308719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 45289152 - 45289216
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||  |||||||||| |||||||| |||||||| |||||||||    
T  45289152 taatgttctatcataaaccatatttggatccaactcattaatctctaaatctttcctaatagttt 45289216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 45493753 - 45493817
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||| |||||||||||| || |||||||||| |||| ||| ||||| |||||||||||||||||    
T  45493753 taatgctctatcatataccatgtttctatccagctcattaacctctggatctttcttaatagttt 45493817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 46431720 - 46431804
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||  ||   ||||||| |||||||| ||||| ||||||||||||| ||||||||  |||||| ||||||||||    
T  46431720 acatggatcaaacgacgcctcaatgttccatcatatataatatctctatccaactcattaatctctagatcttttttaatagttt 46431804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 49841837 - 49841773
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||||| ||||||| |||||||||| |||||| |  |||||| ||||||||||    
T  49841837 taatgttctatcatataccatatttcgatccaactcattaatctttagatctttgttaatagttt 49841773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 36304187 - 36304122
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt 103  Q
    |||||| |||||||| || ||||||  |||||||||| ||||||||  ||||||||||||||||||    
T  36304187 taatgtcctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagtttt 36304122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 42026597 - 42026661
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||||| ||||||||||| |||||| ||||| ||  |||  ||||||||||||    
T  42026597 taatgttctatcatataccatatttctatctaactcattaatccctatatcaatcttaatagttt 42026661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 47804724 - 47804788
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||||  || | ||||| ||||||| |||||||| ||||||||||||| ||||    
T  47804724 taatgttctatcatatagcatgtctctattcaactcattaatctctaaatctttcttaatcgttt 47804788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 40116530 - 40116593
Alignment:
Q  39 aatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||| || |||||||  ||||||||| |||||||| ||||| || |||||||||    
T  40116530 aatgttctatcataaaccatatttcggtccaactcattaatctctaaatctatcctaatagttt 40116593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 19758108 - 19758043
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt 103  Q
    ||||||||||||||| || |||||   |||||||||| |||||||| ||| |||| ||||||||||    
T  19758108 taatgttctatcataaaccatattgagatccaactcattaatctctaaatatttcctaatagtttt 19758043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 388323 - 388387
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||| ||||||||||||  ||||||||||  ||||| |||||||| || |||||| ||||||||    
T  388323 taatgctctatcatataccgtatttctatcttactcattaatctctaaaactttctaaatagttt 388387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 31337621 - 31337657
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactca 74  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  31337621 taatgttctatcaaataccatatttctatccaactca 31337657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 39600742 - 39600806
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||| || || | ||||  |||||||||| ||| |||| ||||||||||||||||||    
T  39600742 taatgttctatcgtaaaccagatttggatccaactcattaacctctaaatctttcttaatagttt 39600806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 40116399 - 40116459
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaata 98  Q
    ||||||||||||||| || |||||||  ||||||||| |||||||| ||||| || |||||    
T  40116399 taatgttctatcataaaccatatttcggtccaactcattaatctctaaatctatcctaata 40116459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 359 - 480
Target Start/End: Original strand, 17279796 - 17279917
Alignment:
Q  359 tacctgcatacaagtctcatcccaatcgtgaccaaaacggatgacaacgagacgttcctcctcagcaaggattgcctgatcaacagcccatcccgaatgc 458  Q
    ||||||||| || |||||||||||||| |||||||||||||||||||| ||||| || |||||||| ||||| |||||||| |||||||| || ||||||    
T  17279796 tacctgcatgcaggtctcatcccaatcatgaccaaaacggatgacaacaagacgctcttcctcagctaggatagcctgatccacagcccaccctgaatgc 17279895  T
Q  459 aagtgaggcagcatgtacgaca 480  Q
    |||||||||| || ||||||||    
T  17279896 aagtgaggcaacaggtacgaca 17279917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 17233832 - 17233925
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatag-ttttctaggttctactctgcctctagtgatt 130  Q
    ||||| |||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||  | |||||||||||||||||    
T  17233832 taatgctctatcatataccatattcctatccaactcaataatcgctggatctttcttaatagtttttctaggtcttcctctgcctctagtgatt 17233925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 13827641 - 13827735
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaa--tctttcttaatag-ttttctaggttctactctgcctctagtgat 129  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||  |  | ||||||||||| ||||||||||  | ||||||||||||||||    
T  13827641 taatgttctatcatataccatatttctatccaactcattaatctctagacttttttcttaatagtttttctaggtcttcctctgcctctagtgat 13827735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 3818917 - 3818981
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||| |||||| || |||||||||| ||||||| |||||||| ||||||||||||||||||    
T  3818917 taatgttccatcataaaccatatttctattcaactcattaatctctaaatctttcttaatagttt 3818981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 10569132 - 10569196
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||||| ||||||||||||| || | ||||||||  |||||||||||||||||    
T  10569132 taatgttctatcatatacgatatttctatccagcttattaatctctagatctttcttaatagttt 10569196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 42501349 - 42501269
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaata 98  Q
    |||||||| |||||  || ||||||||||||||||| | |||||||||||||||||| |||||| |  |||||||||||||    
T  42501349 acatggattaaacgacgctgtaatgttctatcatattccatatttctatccaactcattaatctatagatctttcttaata 42501269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 43375659 - 43375753
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagt--tttctaggttctactctgcctctagtgatt 130  Q
    ||||||||||||||  || |||||||  ||||||||| |||||||| ||||||||||||||||  |||||||||    |||||||||||||||||    
T  43375659 taatgttctatcatgaaccatatttcggtccaactcattaatctctaaatctttcttaatagttatttctaggtctccctctgcctctagtgatt 43375753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 50636302 - 50636235
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttttct 105  Q
    ||||| |||||||||||| |||||| ||||||||||||||||||||  || | |||||||||||||||    
T  50636302 taatgctctatcatataccatatttttatccaactcaataatctctagatttatcttaatagttttct 50636235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 38869123 - 38869043
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaata 98  Q
    ||||||||||||||  ||  |||||||||||||||||| |||| |||||||||| || ||||| ||  |||||||||||||    
T  38869123 acatggatcaaacgacgccataatgttctatcatataccatatatctatccaacccattaatcgctagatctttcttaata 38869043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 40416592 - 40416528
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||| |||||||||| |||||| |  |||||||||||||||||    
T  40416592 taatgttctatcataaaccatatttcgatccaactcattaatctatagatctttcttaatagttt 40416528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 40920590 - 40920635
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctct 83  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||||    
T  40920590 taatattctatcatataccatatttctatccaactcattaatctct 40920635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 6025824 - 6025764
Alignment:
Q  40 atgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagt 100  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||  |||||| ||| ||||    
T  6025824 atgttctatcagataccatatttctatccaactcattaatctctagatcttttttactagt 6025764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 8342942 - 8343006
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||| |||| |||| |||||||||||||||||| ||||||||  |||||| ||||| ||||    
T  8342942 taatgttccatcaaatactatatttctatccaactcattaatctctagatctttattaattgttt 8343006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 8796430 - 8796366
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||| |||||| ||| |||| |||  |||||||||||||||||    
T  8796430 taatgttctatcataaaccatatttcaatccaagtcattaatatctagatctttcttaatagttt 8796366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 15577639 - 15577575
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||| |||  |||| ||||||||||||| ||||||||  ||| |||||||||||||    
T  15577639 taatgttctatcaaatatcatatctctatccaactcattaatctctatatccttcttaatagttt 15577575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 10584968 - 10585023
Alignment:
Q  48 tcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt 103  Q
    |||||||  |||| ||| ||||||||| ||||||||| ||||||||||||||||||    
T  10584968 tcatatatcatatctctgtccaactcattaatctctggatctttcttaatagtttt 10585023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 30834039 - 30834102
Alignment:
Q  39 aatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||  ||| |||| |||||||||||||||||| ||||||||  ||||||| |||||||||    
T  30834039 aatgttccgtcaaatactatatttctatccaactcattaatctctagatctttcgtaatagttt 30834102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 4590596 - 4590658
Alignment:
Q  41 tgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt 103  Q
    |||||||||| |||  |||| |||||||||||||  ||||| | |||||||||||||||||||    
T  4590596 tgttctatcacatatcatatatctatccaactcatcaatctataaatctttcttaatagtttt 4590658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 25460182 - 25460242
Alignment:
Q  40 atgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtt 101  Q
    ||||||||| |||||| ||||||||||| |||||| |||||||| ||| ||| |||||||||    
T  25460182 atgttctattatataccatatttctatcaaactcattaatctct-aatttttattaatagtt 25460242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 29577204 - 29577267
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||  ||||| |||| ||||||||  |||||||||||||||||    
T  29577204 taatgttctatcata-accatattttgatccagctcattaatctctagatctttcttaatagttt 29577267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 30396790 - 30396854
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||||   |||  |||||||||||| ||||||||| ||| ||||||| |||||    
T  30396790 taatgttctatcatatatcgtatccctatccaactcattaatctctggatccttcttaacagttt 30396854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 33560919 - 33560983
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||| | |||||| |||||| ||||||||||  ||||||||  ||||| |||||||||||    
T  33560919 taatgttctctgatataccatatttatatccaactcgctaatctctagatcttacttaatagttt 33560983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 43423921 - 43423881
Alignment:
Q  57 atatttctatccaactcaataatctctgaatctttcttaat 97  Q
    |||||||||||||||||| ||||||||  ||||||||||||    
T  43423921 atatttctatccaactcactaatctctagatctttcttaat 43423881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 52532677 - 52532741
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||   ||||||||| |||| ||| |||||||| |||||||||    
T  52532677 taatgttctatcataaaccatattttgttccaactcattaatttctaaatctttcctaatagttt 52532741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 52633236 - 52633300
Alignment:
Q  41 tgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttttct 105  Q
    |||||||||||| || |||||| ||| ||| ||| |||||| | |||||||| ||||||||||||    
T  52633236 tgttctatcataaaccatatttatatacaattcattaatctataaatctttcataatagttttct 52633300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 41971851 - 41971950
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatag-ttttctaggttctactctgcctctagtgattggacta 136  Q
    ||||||||||||||| ||||||||||  ||||||||| |||||||| ||||||||||| ||| ||||||||||| | || |||||||||||||| |||||    
T  41971851 taatgttctatcataaacaatatttcagtccaactcattaatctctaaatctttcttagtagtttttctaggttttcctttgcctctagtgatttgacta 41971950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 16917403 - 16917340
Alignment:
Q  39 aatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||||| |||||||||||||||||| |||||||| |||||| ||| |||||||    
T  16917403 aatgttctatcatataccatatttctatccaactcattaatctctaaatcttccttgatagttt 16917340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 36069824 - 36069759
Alignment:
Q  37 gtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||| || ||||||||| |||||||| |||||||| ||| ||| ||||||||||    
T  36069824 gtaatgttctatcataaaccatatttctacccaactcattaatctctaaatatttgttaatagttt 36069759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 10079970 - 10080033
Alignment:
Q  40 atgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt 103  Q
    ||||||||||| |||  |||||||||||||||||| ||||||||  ||||||||||| ||||||    
T  10079970 atgttctatcaaatatcatatttctatccaactcattaatctctagatctttcttaacagtttt 10080033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 3638394 - 3638439
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctct 83  Q
    |||||||||||||||||| |||||||| ||||||||| ||||||||    
T  3638394 taatgttctatcatatactatatttctgtccaactcattaatctct 3638439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 35643670 - 35643727
Alignment:
Q  41 tgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaata 98  Q
    |||||||||||| || ||||||| |||||||||| ||||||||  |||||||||||||    
T  35643670 tgttctatcataaaccatatttcgatccaactcattaatctctagatctttcttaata 35643727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 79268 - 79184
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||  ||  | ||||||||||| |  | ||||||||||||| |||| ||||||||  |||||||||||||||||    
T  79268 acatggatcaaacgacgccattatgttctatcacaggccatatttctatccagctcattaatctctagatctttcttaatagttt 79184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 27037856 - 27037792
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||| |||||||| |||| |||||||||||||||||| |||||| |  ||||||| |||||||||    
T  27037856 taatattctatcaaataccatatttctatccaactcattaatctttatatctttcctaatagttt 27037792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 1549432 - 1549507
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttct 93  Q
    ||||||||||||||  | |||||||||||| ||||||  || || |||||||||||| ||||||||  ||||||||    
T  1549432 acatggatcaaacgatgtagtaatgttctaccatatatcatgttgctatccaactcattaatctctagatctttct 1549507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 16994532 - 16994569
Alignment:
Q  65 atccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  16994532 atccaactcaataatctctaaatcattcttaatagttt 16994569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 23492252 - 23492191
Alignment:
Q  41 tgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||  |||||||||||||||||| ||||| ||  |||||||| | ||||||    
T  23492252 tgttctatcatatatcatatttctatccaactcattaatcgctacatctttctgagtagttt 23492191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 490556 - 490492
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||  ||||||||||  ||||||| |||||||| | |||||||    
T  490556 taatgttctatcataaaccatatttggatccaactcatcaatctctaaatctttccttatagttt 490492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 10109034 - 10108970
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||||  |||| |||||| |||||  ||||||||  |||||||||| ||||||    
T  10109034 taatgttctatcatataacatatctctatcaaactcgttaatctctagatctttcttattagttt 10108970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 11733968 - 11733904
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||| ||||||| |||| ||||||||||| |||||| ||||||||  || |||||| |||||||    
T  11733968 taatgctctatcacataccatatttctatctaactcattaatctctagatttttctttatagttt 11733904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 17491715 - 17491779
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||   ||||||||| |||||||  | ||||||||||||||||    
T  17491715 taatgttctatcataaaccatattttggtccaactcattaatctccaagtctttcttaatagttt 17491779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 24399850 - 24399914
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||| |||||||||| || ||||||| |||||||||| |||||||   ||| |||||||||||||    
T  24399850 taatattctatcataaaccatatttcaatccaactcattaatctcgagatccttcttaatagttt 24399914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 29520870 - 29520806
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||  |||||||||| |||||||| |||| ||| ||| |||||    
T  29520870 taatgttctatcataaaccatatttggatccaactcattaatctctaaatcgttcctaacagttt 29520806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 30559914 - 30559850
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || |||| |  |||||||||| |||||||| |||||||| | |||||||    
T  30559914 taatgttctatcataaaccatatatggatccaactcattaatctctaaatctttcctgatagttt 30559850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 35362711 - 35362775
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || |||||||  ||||||||| |||| ||  |||||||| |||||||||    
T  35362711 taatgttctatcatacaccatatttcagtccaactcattaatttccaaatctttcctaatagttt 35362775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 38391954 - 38392018
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||| ||||||||||||| ||||||| |||| ||||| |||||| |  |||||||||||| ||||    
T  38391954 taatattctatcatataccatatttcgatcccactcattaatctgtagatctttcttaatggttt 38392018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 39388984 - 39388940
Alignment:
Q  58 tatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||||| ||||||||  ||||||| |||||||||    
T  39388984 tatttctatccaactcattaatctctagatctttcctaatagttt 39388940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 39967560 - 39967624
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||| |||| || |||| || |||||||||| ||||| ||  |||||||||||||||||    
T  39967560 taatgttctaacataaactatatctcaatccaactcattaatcgctagatctttcttaatagttt 39967624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 1747986 - 1748070
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||  |  ||||||||||||||||||| |||||||||||||||||| |||||||| ||| ||||||| ||||||    
T  1747986 acatggatcaaacgacgtcgtaatgttctatcatatactatatttctatccaactcattaatctctaaatttttcttagtagttt 1748070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 35199684 - 35199747
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||||||| |||||||||| |||||| ||||||||  ||||||| |||||||||    
T  35199684 taatgttctatcatataca-tatttctatctaactcattaatctctagatctttcctaatagttt 35199747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 34566 - 34630
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||| |||||||||| |||||| |  |||||||||||| ||||    
T  34566 taatgttctatcataaaccatatttcaatccaactcattaatctttagatctttcttaatggttt 34630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 24666032 - 24665968
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||| |||||||||| | | |||| ||| ||||||||||||||    
T  24666032 taatgttctatcataaaccatatttcgatccaactcattgacctctaaatatttcttaatagttt 24665968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 67
Target Start/End: Complemental strand, 586071 - 586042
Alignment:
Q  38 taatgttctatcatatacaatatttctatc 67  Q
    ||||||||||||||||||||||||||||||    
T  586071 taatgttctatcatatacaatatttctatc 586042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 5053739 - 5053694
Alignment:
Q  46 tatcatatacaatatttctatccaactcaataatctctgaatcttt 91  Q
    |||||||||| ||||| ||| |||||||| ||||||||||||||||    
T  5053739 tatcatataccatattcctaaccaactcattaatctctgaatcttt 5053694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 10422768 - 10422813
Alignment:
Q  39 aatgttctatcatatacaatatttctatccaactcaataatctctg 84  Q
    |||||||| ||||||| ||||| |||||||||| ||||||||||||    
T  10422768 aatgttctgtcatatataatatctctatccaacccaataatctctg 10422813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 18238210 - 18238271
Alignment:
Q  43 ttctatcatatacaatatttctatccaactcaataatctctgaatctttc-ttaatagtttt 103  Q
    ||||||||||||  |||||| ||||||||||| |||||| | |||||||| |||||||||||    
T  18238210 ttctatcatatatcatatttttatccaactcattaatctgtaaatctttctttaatagtttt 18238271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 32945469 - 32945428
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataat 79  Q
    ||||||||||||||||| |||||||||||| |||||| ||||    
T  32945469 taatgttctatcatataaaatatttctatctaactcattaat 32945428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 33997605 - 33997650
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctct 83  Q
    |||||||| ||||| ||| |||||||||||||||||| ||||||||    
T  33997605 taatgttcaatcatgtaccatatttctatccaactcattaatctct 33997650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 6293453 - 6293517
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||| |||||||||||| ||||||||||| |||||| |||| |||  || |||| |||||||||    
T  6293453 taatgctctatcatataccatatttctatctaactcattaatatctagatatttcctaatagttt 6293517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 8364777 - 8364713
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || || ||||  ||||||| | |||| ||| ||||||||||||||||||    
T  8364777 taatgttctatcataaaccatgtttcagtccaacttattaatttctaaatctttcttaatagttt 8364713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 9593769 - 9593833
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || |||||   |||||||||| |||||||| | |||||| |||||||||    
T  9593769 taatgttctatcataaaccatattgggatccaactcattaatctctaagtctttcctaatagttt 9593833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 37042725 - 37042789
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||| ||||  ||||||||||||||||||||||||||  |||||||||||||||||    
T  37042725 taatgttctatcaaataccgtatttctatccaactcaataatctctagatctttcttaatagttt 37042789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 41192302 - 41192221
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatag 99  Q
    ||||||||| |||| |||  |||||||||| ||||||| |||||||||||||||||| ||||||||  ||||||||| ||||    
T  41192302 acatggatcgaacgaagccataatgttctaccatataccatatttctatccaactcattaatctctagatctttctttatag 41192221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 42639081 - 42639145
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||| |||| |||||||||||||||||| ||||| ||  |||||||||||||||||    
T  42639081 taatgttctatcaaataccatatttctatccaactcattaatcgctagatctttcttaatagttt 42639145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 47372872 - 47372808
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||| |||||| ||| ||||||    
T  47372872 taatgttctataatataccatatttctatccaactcattaatctctggatctttattagtagttt 47372808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 25575044 - 25574982
Alignment:
Q  39 aatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtt 101  Q
    |||||||||||||| || ||||||| |||||||||| ||||||||  ||||||||||||||||    
T  25575044 aatgttctatcataaaccatatttcgatccaactcattaatctctagatctttcttaatagtt 25574982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 40018230 - 40018315
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt 103  Q
    ||||||||||||||  || ||||||||||||||||||  ||||  |||||||||||| | ||||||  ||||||||||| ||||||    
T  40018230 acatggatcaaacgacgccgtaatgttctatcatatatcatatccctatccaactcattgatctctagatctttcttaacagtttt 40018315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 7681951 - 7682035
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||  ||| |||||| ||||||||||| ||||||||||| |||||| |||||| |  || |||||| |||||||    
T  7681951 acatggatcaaacgatgcaataatgtcctatcatataccatatttctatctaactcattaatctatagatttttcttgatagttt 7682035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 30621262 - 30621326
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || |||||||  |||||| || |||||||| ||||||||||||||||||    
T  30621262 taatgttctatcataaaccatatttcggtccaacacattaatctctaaatctttcttaatagttt 30621326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 6843836 - 6843774
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagt 100  Q
    ||||||||||| |||||  ||||||||||| |||||| ||||||||  |||||||||||||||    
T  6843836 taatgttctattatataacatatttctatcaaactcattaatctctagatctttcttaatagt 6843774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 31403095 - 31403160
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt 103  Q
    ||||| |||||||||||| | |||||||||||||| | ||||||||  ||||||| ||||||||||    
T  31403095 taatgctctatcatataccacatttctatccaactaattaatctctagatctttcataatagtttt 31403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 42293325 - 42293390
Alignment:
Q  37 gtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||| |||||||||||| |||| |||||| |||||| |||| |||  |||||||||||||||||    
T  42293325 gtaatgctctatcatataccatatgtctatctaactcattaatttctagatctttcttaatagttt 42293390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 47147592 - 47147530
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||||  ||||  |||||||||||| ||||||||  |||||||||||||||||    
T  47147592 taatgttctatcatatatcatat--ctatccaactcattaatctctagatctttcttaatagttt 47147530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 26024911 - 26024975
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || || | || |||||||||| ||||||||  |||||||||||||||||    
T  26024911 taatgttctatcataaaccatgtctcgatccaactcattaatctctagatctttcttaatagttt 26024975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 55007967 - 55007907
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaata 98  Q
    ||||| ||||||||| || |||||||  ||||||||| |||||||| ||||||||||||||    
T  55007967 taatgatctatcataaaccatatttcggtccaactcattaatctctaaatctttcttaata 55007907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 29209236 - 29209279
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatct 81  Q
    ||||| |||||||||||| |||||||||||||||||| ||||||    
T  29209236 taatgctctatcatataccatatttctatccaactcattaatct 29209279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 31339745 - 31339650
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttctta-atag-ttttctaggttctactctgcctctagtgattg 131  Q
    |||||||||||||| ||| ||||||| |||||||||| ||||||||  ||  |||| | |||| ||||||||||  | ||||||||||||||||||    
T  31339745 taatgttctatcatgtaccatatttcgatccaactcattaatctctagataattctcatatagtttttctaggtcttcctctgcctctagtgattg 31339650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 44385051 - 44384988
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtt 101  Q
    ||||||||||||||| || |||||  ||||||||| | ||||||||  ||||||||||||||||    
T  44385051 taatgttctatcataaaccatattaatatccaacttattaatctctagatctttcttaatagtt 44384988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 22420778 - 22420835
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttctta 95  Q
    ||||| |||||||| ||| |||| ||||||||||||| ||||||||  ||||||||||    
T  22420778 taatgctctatcatttaccatatctctatccaactcattaatctctagatctttctta 22420835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 28351753 - 28351716
Alignment:
Q  65 atccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  28351753 atccaactcaataatctctaaatctttcgtaatagttt 28351716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 32339800 - 32339715
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt 103  Q
    ||||||||||||||  ||  |||| ||||||||||||  |||| ||||||||||||  ||||||||   | |||||||||||||||    
T  32339800 acatggatcaaacgacgccataattttctatcatatatcatatctctatccaactcgttaatctctaggtatttcttaatagtttt 32339715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 54470448 - 54470383
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctct 83  Q
    |||||||||||| |  ||| ||||| ||  |||||||| |||||||||||||||||| ||||||||    
T  54470448 acatggatcaaatgacgcaataatgctcagtcatataccatatttctatccaactcattaatctct 54470383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 934492 - 934556
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||||  |||   |||||||||||| ||||||||  | |||||||||||||||    
T  934492 taatgttctatcatatatcataaccctatccaactcattaatctctagaactttcttaatagttt 934556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 45204900 - 45204964
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||  |||||||| | ||| |||| |||||||| |||||||||    
T  45204900 taatgttctatcataaaccatatttggatccaacttattaaactctaaatctttcctaatagttt 45204964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 53540511 - 53540447
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || |||||| | ||||||||| |||||||  | |||||| |||||||||    
T  53540511 taatgttctatcataaaccatatttttgtccaactcattaatctccaagtctttcctaatagttt 53540447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 55388273 - 55388333
Alignment:
Q  39 aatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatag 99  Q
    |||||||||||||| |  ||||||| ||| |||||| |||||||  |||||||||||||||    
T  55388273 aatgttctatcataaatcatatttcgatctaactcattaatctccaaatctttcttaatag 55388333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 56439632 - 56439696
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||| |||||||| | |||| ||  |||||||| |||||||||    
T  56439632 taatgttctatcataaaccatatttcgatccaactaattaatttccaaatctttcataatagttt 56439696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 42149721 - 42149785
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||||||||| |||||||||||||  |||||||||||||||||    
T  42149721 taatgttctatcataaaccatatttctatccagctcaataatctctagatctttcttaatagttt 42149785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 8197582 - 8197666
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||  ||  |||| ||||||||||||  |||||||||||||||||| |||||| |  |||||||||||||||||    
T  8197582 acatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttcttaatagttt 8197666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 8202342 - 8202426
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||  ||  |||| ||||||||||||  |||||||||||||||||| |||||| |  |||||||||||||||||    
T  8202342 acatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaatctttagatctttcttaatagttt 8202426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 19336954 - 19337018
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||| |||||||||| |||||||| |||||||||| |||||||    
T  19336954 taatgttctatcataaaccatatttcgatccaactcattaatctctaaatctttctttatagttt 19337018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 26784402 - 26784465
Alignment:
Q  39 aatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||| |||||||||| |||||||||| ||||||| ||||||||  |||||||||||||||||    
T  26784402 aatgttttatcatataccatatttctattcaactcattaatctctatatctttcttaatagttt 26784465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 37452287 - 37452348
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatag 99  Q
    ||||||||||||||| || |||||||| ||||||||| |||||||| | |||||||||||||    
T  37452287 taatgttctatcataaaccatatttctgtccaactcattaatctctaattctttcttaatag 37452348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 19855683 - 19855619
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||| |||||||||||| || |||||||||| |||| ||| ||||| |||||||||||||||||    
T  19855683 taatgctctatcatataccatgtttctatccagctcattaacctctggatctttcttaatagttt 19855619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 19235046 - 19235109
Alignment:
Q  39 aatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||| |||| |||||||||||||| ||| ||||||||  |||||||| ||||||||    
T  19235046 aatgttctatcaaataccatatttctatccaaatcattaatctctagatctttctcaatagttt 19235109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 45077948 - 45077883
Alignment:
Q  40 atgttctatcatatacaatatttctatccaactc--aataatctctgaatctttcttaatagtttt 103  Q
    ||||||||||||| || ||||||| |||||||||  | |||||||| |||||||||||||||||||    
T  45077948 atgttctatcataaactatatttcgatccaactctcattaatctctaaatctttcttaatagtttt 45077883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 11412921 - 11412837
Alignment:
Q  45 ctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt-ctaggttctactctgcctctagtgat 129  Q
    |||||||| || ||||||  |||||||||| |||||||| |||||||| |||||||||| ||||||| | ||||| ||||||||||    
T  11412921 ctatcataaaccatatttggatccaactcattaatctct-aatctttcctaatagtttttctaggttttcctctggctctagtgat 11412837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 32402721 - 32402676
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctct 83  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||    
T  32402721 taatgttctatcatataccttatttctatccaactcattaatctct 32402676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 33504445 - 33504380
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaat-aatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||||| ||||||| |||||||| | | |||||||  |||||||||||||||||    
T  33504445 taatgttctatcatataccatatttcaatccaacttattaaatctctagatctttcttaatagttt 33504380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 2377274 - 2377210
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||||| ||| ||  |||||||||| || ||||| ||||||| ||||||||||    
T  2377274 taatgttctatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 2377210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 7615490 - 7615399
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt-ctaggttctactctgcctctagtgat 129  Q
    ||||||| |||||||||| || ||||||||||| ||| | |||||| || |||||||||||||||| ||||||  | || |||||||||||||    
T  7615490 taatgttttatcatataccat-tttctatccaattcattcatctctaaacctttcttaatagttttcctaggtcttcctttgcctctagtgat 7615399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 9496087 - 9496023
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||  |||||||||| ||| |||| ||||||||| ||||||||    
T  9496087 taatgttctatcataaaccatatttggatccaactcattaacctctaaatctttctgaatagttt 9496023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 12141765 - 12141701
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||||| ||||||  |||||| ||| |||||||| | |||||| |||||||||    
T  12141765 taatgttctatcatataccatatttggatccaagtcattaatctctaagtctttcctaatagttt 12141701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 31254509 - 31254445
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||| ||||| |  |||||||||| ||||||| ||||||||  |||||||||||||||||    
T  31254509 taatgttctgtcataaatcatatttctattcaactcattaatctctagatctttcttaatagttt 31254445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 33287642 - 33287578
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||| ||| |||||| |||| |||  |||||||||||||||||    
T  33287642 taatgttctatcataaaccatatttcgatctaactcattaatttctagatctttcttaatagttt 33287578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 33625259 - 33625323
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||| || ||||||||| ||||||||  || ||||||||||||||    
T  33625259 taatgttctatcataaaccatattactttccaactcattaatctctagatatttcttaatagttt 33625323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 37470194 - 37470258
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||| | ||||||| |||||||||| ||||||||  |||| || |||||||||    
T  37470194 taatgttctatcatatgccatatttcgatccaactcattaatctctagatctgtcctaatagttt 37470258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 1626415 - 1626352
Alignment:
Q  39 aatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||| |||||  |||||| ||| ||||||| ||||||||  |||||||||||||||||    
T  1626415 aatgttctattatatatcatatttttatacaactcattaatctctagatctttcttaatagttt 1626352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 6219186 - 6219127
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaat 97  Q
    ||||||||||||||| || |||||||  ||||||||| |||||||| |||||||| ||||    
T  6219186 taatgttctatcataaaccatatttcggtccaactcactaatctctaaatctttcctaat 6219127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 12026085 - 12026130
Alignment:
Q  57 atatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||| |||||| ||||||||  |||||||||||||||||    
T  12026085 atatttctatcaaactcattaatctctagatctttcttaatagttt 12026130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 42582504 - 42582565
Alignment:
Q  43 ttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttttc 104  Q
    |||| |||||||| ||||||||||| |||||| ||||||||  |||||| |||| |||||||    
T  42582504 ttctttcatatactatatttctatcaaactcattaatctctacatcttttttaacagttttc 42582565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 9556430 - 9556494
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || |||| |  |||||||||| ||||| ||  |||||||||||||||||    
T  9556430 taatgttctatcataaaccatatcttgatccaactcattaatcactagatctttcttaatagttt 9556494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 26670961 - 26670925
Alignment:
Q  66 tccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  26670961 tccaactcattaatctctaaatctttcttaatagttt 26670925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 37481678 - 37481742
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||| |||||||| |||| |||||| ||||||||||| | ||| ||  |||||||||||||||||    
T  37481678 taattttctatcaaataccatatttttatccaactcatttatcgctagatctttcttaatagttt 37481742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 38435173 - 38435109
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||| |||||| || | ||||| ||||||| || ||||||||  |||||||||||||||||    
T  38435173 taatgttcaatcataaaccaaatttcgatccaacacattaatctctagatctttcttaatagttt 38435109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 28542007 - 28542097
Alignment:
Q  40 atgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatag-ttttctaggttctactctgcctctagtgat 129  Q
    ||||||||||||| || ||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||||  | || |||||||||||||    
T  28542007 atgttctatcataaaccatagttcaatccaactcattaatctctaaatctttcttaatagtttttctaggtcttcctatgcctctagtgat 28542097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 28858262 - 28858202
Alignment:
Q  42 gttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||| ||||||||||||||||| | ||||||||  |||||||||||||||||    
T  28858262 gttctatcatataaaatatttctatccaacttattaatctctagatctttcttaatagttt 28858202  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 1569238 - 1569174
Alignment:
Q  37 gtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtt 101  Q
    |||||||||||||||| || ||||||  |||||||||| ||||||||  ||||||||||||||||    
T  1569238 gtaatgttctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagtt 1569174  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 12966229 - 12966173
Alignment:
Q  46 tatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||| |||||||||||||| ||| |||||||| ||| ||||||||||||||    
T  12966229 tatcatataccatatttctatccaaatcattaatctctaaatatttcttaatagttt 12966173  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 36101838 - 36101930
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaat-agttttctaggttctactctgcctctagtgat 129  Q
    ||||||||||||||| || ||||||  |||||||||| |||||| | |||||||| |||| | ||||||||||  | ||||||||||||||||    
T  36101838 taatgttctatcataaaccatattttgatccaactcattaatctataaatctttcataataatttttctaggtcttcctctgcctctagtgat 36101930  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 5418287 - 5418197
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttttctaggttctactctgcctctagtgat 129  Q
    ||||||||||||||| || |||||||  ||||||||| ||| |||| ||||||||||||||||||  |||||  | || |||||||||||||    
T  5418287 taatgttctatcataaaccatatttcggtccaactcattaa-ctcttaatctttcttaatagtttagtaggtcttcctttgcctctagtgat 5418197  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 24549754 - 24549813
Alignment:
Q  43 ttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||| |||| ||||||| |||||||||| ||||||||  |||||||||||||||||    
T  24549754 ttctatcaaataccatatttcaatccaactcattaatctctagatctttcttaatagttt 24549813  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 36193736 - 36193790
Alignment:
Q  46 tatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagt 100  Q
    |||||||||| ||||| || ||||||||| |||||||||||||||| ||||||||    
T  36193736 tatcatataccatattcctgtccaactcattaatctctgaatctttgttaatagt 36193790  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 27893624 - 27893689
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt 103  Q
    ||||||||||||||| |  |||||||  |||| |||| |||||||| |||||||||||||||||||    
T  27893624 taatgttctatcataaaacatatttcggtccagctcattaatctctaaatctttcttaatagtttt 27893689  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 28627994 - 28628058
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || | ||||  |||||||||| |||||||| |||||||| |||||||||    
T  28627994 taatgttctatcataaaccacatttgcatccaactcattaatctctaaatctttcctaatagttt 28628058  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 37976456 - 37976392
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||  |||||||||| |||||||| |||||||| || ||||||    
T  37976456 taatgttctatcataaaccatatttggatccaactcattaatctctaaatctttcatattagttt 37976392  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 30200025 - 30200083
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaa 96  Q
    ||||| |||||||||||| |||||| |||| |||||| ||||||||  |||||||||||    
T  30200025 taatggtctatcatataccatatttatatcaaactcattaatctctagatctttcttaa 30200083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 29653626 - 29653671
Alignment:
Q  57 atatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29653626 atatttctatctaactcattaatctctagatctttcttaatagttt 29653671  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 40169877 - 40169812
Alignment:
Q  37 gtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||||| || |||| |   ||||||| | |||||||||| ||||||||||||||||    
T  40169877 gtaatgttctatcatagaccatatgttggtccaactaactaatctctgagtctttcttaatagttt 40169812  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 41578188 - 41578249
Alignment:
Q  42 gttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt 103  Q
    |||||||||||||  |||| ||||||||||||| ||||||||  || |||||||| ||||||    
T  41578188 gttctatcatatatcatatctctatccaactcactaatctctatatgtttcttaacagtttt 41578249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 6807445 - 6807389
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactca 74  Q
    ||||||||||||||  ||  ||||||||||||||| || ||||||||||| ||||||    
T  6807445 acatggatcaaacgacgccataatgttctatcatacaccatatttctatctaactca 6807389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 22174221 - 22174157
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||| |||| ||||||||||| || ||| ||||||||  |||||| || |||||||    
T  22174221 taatgttctatcacataccatatttctatctaattcattaatctctagatctttgtttatagttt 22174157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 35922474 - 35922410
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| |  ||||||  || ||||||| ||| |||| ||||||||||||||||||    
T  35922474 taatgttctatcataaatcatatttagattcaactcattaacctctaaatctttcttaatagttt 35922410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 40139009 - 40139073
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||| |||||||||||   ||||||||||| ||| || ||||||||  |||||||||||||||||    
T  40139009 taatattctatcatatgtcatatttctatcaaacgcattaatctctagatctttcttaatagttt 40139073  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 12576921 - 12576985
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||| |||||||||||| |||||||||| ||||||| ||||||||  |||||||||||||||||    
T  12576921 taatggtctatcatataccatatttctattcaactcattaatctctagatctttcttaatagttt 12576985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 9235268 - 9235204
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || ||||||| ||||| |||| ||||||||  |||||||||||||||||    
T  9235268 taatgttctatcataaaccatatttcgatccagctcattaatctctatatctttcttaatagttt 9235204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 28186855 - 28186900
Alignment:
Q  57 atatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||||    
T  28186855 atatctctatccaactcattaatctctaaatctttcttaatagttt 28186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 37918254 - 37918189
Alignment:
Q  37 gtaatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||| ||||| |||||||||||| |||||||||| ||||||||  |||||||| || |||||    
T  37918254 gtaatgttttatcaaatacaatatttcaatccaactcattaatctctatatctttctaaacagttt 37918189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 43475441 - 43475396
Alignment:
Q  57 atatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||    
T  43475441 atatttcgatccaactcattaatctctggatctttcttaatagttt 43475396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 43557894 - 43557947
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatcttt 91  Q
    ||||||||||||||| || ||||||| ||||||||||||||||||  |||||||    
T  43557894 taatgttctatcataaaccatatttcgatccaactcaataatctccaaatcttt 43557947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 35615504 - 35615440
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || |||||| ||||||||||| |||||||| ||| ||| | ||||||||    
T  35615504 taatgttctatcataaactatatttttatccaactcattaatctctaaatttttatgaatagttt 35615440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 38684701 - 38684637
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    |||||||||||||  ||| |||||||||||||||| | ||||||||  ||||||||||| |||||    
T  38684701 taatgttctatcaagtaccatatttctatccaactaattaatctctagatctttcttaaaagttt 38684637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 39322146 - 39322192
Alignment:
Q  57 atatttctatccaactcaataatctctgaatctttcttaatagtttt 103  Q
    |||||||||||||||||| |||||| |  ||||||||||||||||||    
T  39322146 atatttctatccaactcattaatctttagatctttcttaatagtttt 39322192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 18350963 - 18351008
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctct 83  Q
    |||||||||| || |||| |||||||||||||||||| ||||||||    
T  18350963 taatgttctaacaaataccatatttctatccaactcattaatctct 18351008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 28005755 - 28005691
Alignment:
Q  39 aatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagtttt 103  Q
    ||||||||||| ||||  ||||  ||||| |||||| ||||||||  ||||||||||||||||||    
T  28005755 aatgttctatcgtatatcatatccctatcaaactcattaatctctagatctttcttaatagtttt 28005691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 2362 - 2424
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagt 100  Q
    ||||||||||| |||||  ||||||||||| |||||| ||||||||  |||||||||||||||    
T  2362 taatgttctattatataacatatttctatcaaactcattaatctctagatctttcttaatagt 2424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 25484 - 25570
Alignment:
Q  18 acatggatcaaacggagcagtaatgttctatcatatacaatatttctatccaactcaataatctctgaatc-tttcttaatagtttt 103  Q
    |||| ||||||||| |||  ||||||| |||||||||   ||||||||||||||||| |||||||| |||| ||| |||||||||||    
T  25484 acatagatcaaacgaagccataatgttttatcatataacttatttctatccaactcattaatctctaaatcattttttaatagtttt 25570  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 160385 - 160449
Alignment:
Q  38 taatgttctatcatatacaatatttctatccaactcaataatctctgaatctttcttaatagttt 102  Q
    ||||||||||||||| || |||||||  || |||||| |||| ||| |||||||| |||||||||    
T  160385 taatgttctatcataaaccatatttcggtcgaactcattaatttcttaatctttcctaatagttt 160449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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