View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_high_6 (Length: 488)
Name: NF11405_high_6
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Complemental strand, 31455769 - 31455316
Alignment:
| Q |
17 |
atagatttgtaaacgagcaaatcctaaaatattcggactacatgaccactc-tattcacatttacaatattggaatctgatttatacattactcatcatt |
115 |
Q |
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| T |
31455769 |
atagatttgtaaaagagcaaatcctaaaaaattcggactacatgatcactaatattcacatttacaatattggaatctgatttat--------------- |
31455685 |
T |
|
| Q |
116 |
atcctaatgagcaagcatattaagaaatgaaactctatttcttactaaacatctataaatgcaatccaatccaccttcaagtccacaaacattaacattc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31455684 |
--cctaatgagcaagcatattaagaaatgaaactctatttcgtactaaacatctataaatgcaatccaatccaccttcaagtccacaaacattaacattc |
31455587 |
T |
|
| Q |
216 |
aatgtctctaacactctcaagagtgctggaaaatctgtgttcttatgttcattctctgaagaaaacaatcttgttggattaagcttcgagatcaacgatg |
315 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31455586 |
aatgtctctaacactcttaagagtgcaacaaaatctgtgttcttatgttcattctctgaagaaaacaatcttgttggattaagcttcgagatcaacgatg |
31455487 |
T |
|
| Q |
316 |
atccttttgttgttcgaagtcttggcgttgatatgaatagtaaaagagaacgaaatatagatattgtgatggtggtagcttctcttaaaaccttagccaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31455486 |
atccttttgttgttcgaagtcttggcgttgatatgaatagtaaaagagaacgaaatatagatattgtgatggtggtagcttctcttaaaaccttagccaa |
31455387 |
T |
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| Q |
416 |
aaatattaaattttgatcttgtcccataatagaaaaaagctttactttgttttccattttcttcatctcac |
486 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31455386 |
aaatattaaattttgatcttggcccataatagaaaaaagctttactttgttttccattttcttcatttcac |
31455316 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 9384729 - 9384817
Alignment:
| Q |
147 |
actctatttcttactaaacatctataaatgcaatccaatccaccttcaagtccacaaacattaacattcaatgtctctaacactctcaa |
235 |
Q |
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||||||||| |||| ||||||||| | |||||||| ||||||||||| | | | |||||||||||||||||||||||||| |||||| |
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| T |
9384729 |
actctattttttaccaaacatctaaatatgcaatctaatccaccttctaaactatcaacattaacattcaatgtctctaacaatctcaa |
9384817 |
T |
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