View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_high_7 (Length: 479)
Name: NF11405_high_7
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 15 - 463
Target Start/End: Complemental strand, 2690165 - 2689717
Alignment:
| Q |
15 |
cagagagcaatggaaattgtcgatgctttcattcatgatttgagtcccaacactgaggctttgagatgcatacaaatagggatgttatgtgtgcaagatt |
114 |
Q |
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| T |
2690165 |
cagagagcaatggaaattgtggatgcttgcattcatgatttgagtcccaacactgaggctttgagatgcatacaaatagggatgttatgtgtgcaagatt |
2690066 |
T |
|
| Q |
115 |
cagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaacaactcttcccttacctacgcagcctttggatacttccatcaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2690065 |
cagcatctcatagaccaaacatgtccgatattgtttcgatgcttgagagtgaagcaacaactcttcccttacctacgcagcctttggatacttccatcaa |
2689966 |
T |
|
| Q |
215 |
aagatctgtggacagagagtgttacaaggatggtgttgatatttcaaatgatctcgcagtcacaacggtagaagggagatagaactgatgccctttctga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2689965 |
aagatctgtggacagagagtgttacaaggatggtgttgatatttcaaatgatcttgcagtcacaacggtagaagggagatagaactgatgccctttctga |
2689866 |
T |
|
| Q |
315 |
gctattttcgtttgcatacacacggctcatagttatgttgatttttcctctttttgcctcttgaattggaagtatagtcttgaaattaaatacattctat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2689865 |
gctattttcgtttgcatacacacggctcatagttatgttgatttttcctctttttgcctcttgaattggaagtatagtcttgaaattaaatacattctat |
2689766 |
T |
|
| Q |
415 |
attgataggccgcaagagcacgattatatagtgtaacaaaaatatcttt |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2689765 |
attgataggccgcaagagcacgattatatagtgtaacaaaaatatcttt |
2689717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 72 - 390
Target Start/End: Complemental strand, 2697914 - 2697596
Alignment:
| Q |
72 |
gctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaa |
171 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| | | ||||||| |||||||||| |
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|
| T |
2697914 |
gctttgagatgtatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaatatgtccaaagttgtgttgttgcttgagagtgaagcaa |
2697815 |
T |
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| Q |
172 |
caactcttcccttacctacgcagcctttggatacttccatcaaaagatctgtggacagagagtgttacaaggatggtgttgatatttcaaatgatctcgc |
271 |
Q |
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| T |
2697814 |
cgactcttcccatacctacgcagcctttgattacttccatgaggagatctgaggatagagagttttacatggatggtcttgattgttcaaatgatctcac |
2697715 |
T |
|
| Q |
272 |
agtcacaacggtagaagggagatagaactgatgccctttctgagct-----attttcgtttgcatacacacggctcatagttatgttgatttttcctctt |
366 |
Q |
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||| |||| ||||| ||||||||| || | ||| |||||||||| | ||||| |||| ||||| |||||||||| |||||| |||||||||| |
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| T |
2697714 |
agttacaatggtagcagggagataaaattaatgtcctttctgagttgagtcatttttatttg----cacacagctcatagttttgttga-ttttcctctt |
2697620 |
T |
|
| Q |
367 |
tttgcctcttgaattggaagtata |
390 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
2697619 |
tttgcctcttgaattgaaagtata |
2697596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 79 - 448
Target Start/End: Complemental strand, 14519269 - 14518890
Alignment:
| Q |
79 |
gatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaacaactct |
178 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||| | ||||||||| ||| || ||| ||||| |
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| T |
14519269 |
gatgcatacaaatagggatgttatgtgtgcaagatttagcatctcgacgaccaaagatgtccgaaattgtgttgatgcttgagagtaaatcaattactct |
14519170 |
T |
|
| Q |
179 |
tcccttacctacgcagcctttggatacttccatcaaaagatctgtggacagagagtgttacaaggatggtgttgatatttcaaatgatctcgcagtcaca |
278 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| || ||||||||| | |||| ||| ||||||| |||||||||||| || ||||| |
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|
| T |
14519169 |
tcccttacctatgcagcctttgattacttccatcaaaagaaacgttaacagagagtctcccaagaatgctgttgatgactcaaatgatctcacaatcaca |
14519070 |
T |
|
| Q |
279 |
acggtagaagggagatag----aactgatgccctttctgagcta------ttttcgtttgcatacacacggctcatagttatgttgatttttcct-cttt |
367 |
Q |
| |
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| |||||||||||||||| | | ||||| ||||| |||| |||| ||||||||||||| ||||||| || ||||| |||||| | ||| |
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| T |
14519069 |
atggtagaagggagatagatttagttaatgccatttctctgctatttttgtttttgtttgcatacaca-tgctcatacttttgttgctttttcatgtttt |
14518971 |
T |
|
| Q |
368 |
ttgcctcttgaattggaagtatagtcttgaaattaaatacattctatattgataggccgcaagagcacgattatatagtgt |
448 |
Q |
| |
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|||| || |||||| || ||| ||||| ||||||||||||| |||||||||||| |||||| ||||| |||||| |||| |
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| T |
14518970 |
ttgcttcaagaattgaaaatattatcttggaattaaatacattgtatattgataggtcgcaagtgcacggttatatcgtgt |
14518890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 36291110 - 36291222
Alignment:
| Q |
72 |
gctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaa |
171 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||||||| |
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| T |
36291110 |
gctttgagatgcatccacatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtcctcagtggtgttgatgcttgaaagtgaagcaa |
36291209 |
T |
|
| Q |
172 |
caactcttccctt |
184 |
Q |
| |
|
||||||||||||| |
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| T |
36291210 |
caactcttccctt |
36291222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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