View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11405_high_9 (Length: 423)

Name: NF11405_high_9
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11405_high_9
NF11405_high_9
[»] chr5 (35 HSPs)
chr5 (294-406)||(28191163-28191277)
chr5 (1-44)||(1650342-1650385)
chr5 (1-44)||(1833353-1833396)
chr5 (1-44)||(5203602-5203645)
chr5 (1-44)||(9054005-9054048)
chr5 (1-44)||(12665146-12665189)
chr5 (1-44)||(40318819-40318862)
chr5 (1-43)||(4429975-4430017)
chr5 (1-42)||(24443901-24443942)
chr5 (1-44)||(4617800-4617843)
chr5 (1-44)||(6672292-6672335)
chr5 (1-44)||(16496651-16496694)
chr5 (1-44)||(18473965-18474008)
chr5 (1-44)||(23074678-23074721)
chr5 (1-44)||(34930276-34930319)
chr5 (1-44)||(36246028-36246071)
chr5 (1-44)||(36569330-36569373)
chr5 (1-44)||(36854192-36854235)
chr5 (1-44)||(37940969-37941012)
chr5 (1-40)||(38975772-38975811)
chr5 (1-44)||(39150960-39151003)
chr5 (1-44)||(41408678-41408721)
chr5 (1-44)||(41562509-41562552)
chr5 (1-44)||(42068592-42068635)
chr5 (1-44)||(42448262-42448305)
chr5 (1-43)||(1287367-1287409)
chr5 (1-43)||(4165011-4165053)
chr5 (1-43)||(20695517-20695559)
chr5 (1-43)||(26802386-26802428)
chr5 (1-43)||(26809936-26809978)
chr5 (1-43)||(26824963-26825005)
chr5 (1-42)||(36136896-36136937)
chr5 (1-42)||(36790349-36790390)
chr5 (3-44)||(39527983-39528024)
chr5 (1-41)||(10393536-10393576)
[»] chr8 (28 HSPs)
chr8 (1-44)||(37817427-37817470)
chr8 (1-43)||(2508168-2508210)
chr8 (1-43)||(38216789-38216831)
chr8 (1-42)||(35497670-35497711)
chr8 (1-44)||(4312184-4312227)
chr8 (1-44)||(4977068-4977111)
chr8 (1-44)||(10096663-10096706)
chr8 (1-44)||(23681061-23681104)
chr8 (1-44)||(24242619-24242662)
chr8 (1-44)||(25063391-25063434)
chr8 (1-44)||(27928209-27928252)
chr8 (1-44)||(31639136-31639179)
chr8 (1-44)||(34711589-34711632)
chr8 (1-44)||(37295177-37295220)
chr8 (1-43)||(4430769-4430811)
chr8 (1-43)||(4694721-4694763)
chr8 (1-43)||(6317352-6317394)
chr8 (1-43)||(9998677-9998719)
chr8 (1-43)||(26738023-26738065)
chr8 (1-43)||(27817483-27817525)
chr8 (1-43)||(27849777-27849819)
chr8 (1-43)||(38953514-38953556)
chr8 (1-43)||(44814915-44814957)
chr8 (3-44)||(2442813-2442854)
chr8 (3-44)||(16501700-16501741)
chr8 (3-44)||(33067424-33067465)
chr8 (2-42)||(37708482-37708522)
chr8 (4-44)||(39666932-39666972)
[»] chr7 (20 HSPs)
chr7 (1-44)||(1869867-1869910)
chr7 (1-42)||(5723637-5723678)
chr7 (1-44)||(4069150-4069193)
chr7 (1-44)||(4106605-4106648)
chr7 (1-44)||(5508736-5508779)
chr7 (1-44)||(17895685-17895728)
chr7 (1-44)||(19258475-19258518)
chr7 (1-44)||(21226116-21226159)
chr7 (1-44)||(31717348-31717391)
chr7 (1-44)||(40012023-40012066)
chr7 (1-44)||(40656142-40656185)
chr7 (2-44)||(1573876-1573918)
chr7 (1-43)||(2354831-2354873)
chr7 (1-43)||(4674343-4674385)
chr7 (1-43)||(7312487-7312529)
chr7 (1-43)||(32251369-32251411)
chr7 (1-43)||(43133137-43133179)
chr7 (1-43)||(45236982-45237024)
chr7 (4-44)||(43416324-43416364)
chr7 (1-41)||(45041767-45041807)
[»] chr4 (25 HSPs)
chr4 (1-44)||(38814634-38814677)
chr4 (1-43)||(46488151-46488193)
chr4 (1-43)||(51675701-51675743)
chr4 (1-44)||(7512818-7512861)
chr4 (1-44)||(12315964-12316007)
chr4 (1-44)||(28983783-28983826)
chr4 (1-44)||(35828325-35828368)
chr4 (1-44)||(47462070-47462113)
chr4 (1-44)||(51281517-51281560)
chr4 (1-43)||(5333240-5333282)
chr4 (1-43)||(5396974-5397016)
chr4 (1-43)||(7944258-7944300)
chr4 (1-43)||(16476971-16477013)
chr4 (1-43)||(24712140-24712182)
chr4 (2-44)||(31375164-31375206)
chr4 (1-43)||(34660825-34660867)
chr4 (1-43)||(34684254-34684296)
chr4 (1-43)||(39284609-39284651)
chr4 (1-43)||(42154172-42154214)
chr4 (2-43)||(1083560-1083601)
chr4 (1-42)||(8017903-8017944)
chr4 (3-44)||(12821216-12821257)
chr4 (1-42)||(16971716-16971757)
chr4 (3-44)||(21378339-21378380)
chr4 (1-41)||(6487900-6487940)
[»] chr1 (19 HSPs)
chr1 (1-44)||(18216395-18216438)
chr1 (1-44)||(39606456-39606499)
chr1 (3-43)||(40685581-40685621)
chr1 (1-44)||(1576425-1576468)
chr1 (1-44)||(10635540-10635583)
chr1 (1-44)||(19338212-19338255)
chr1 (1-44)||(20164107-20164150)
chr1 (1-44)||(21522368-21522411)
chr1 (1-44)||(29005141-29005184)
chr1 (1-44)||(42631019-42631062)
chr1 (6-44)||(8214674-8214712)
chr1 (1-43)||(13555758-13555800)
chr1 (1-43)||(48314219-48314261)
chr1 (1-43)||(49632607-49632649)
chr1 (1-43)||(50248081-50248123)
chr1 (1-43)||(51263847-51263889)
chr1 (3-44)||(270357-270398)
chr1 (1-42)||(15952866-15952907)
chr1 (10-42)||(11081004-11081036)
[»] scaffold0244 (1 HSPs)
scaffold0244 (1-43)||(7791-7833)
[»] chr3 (34 HSPs)
chr3 (1-43)||(11076457-11076499)
chr3 (1-42)||(38485993-38486034)
chr3 (1-37)||(40559732-40559768)
chr3 (1-44)||(2096619-2096662)
chr3 (1-44)||(3440777-3440820)
chr3 (1-44)||(4232211-4232254)
chr3 (1-44)||(5998816-5998859)
chr3 (1-44)||(8381130-8381173)
chr3 (1-44)||(10473948-10473991)
chr3 (1-44)||(13525220-13525263)
chr3 (1-44)||(24650581-24650624)
chr3 (1-44)||(28266577-28266620)
chr3 (1-44)||(29212099-29212142)
chr3 (1-44)||(30553002-30553045)
chr3 (1-44)||(32961012-32961055)
chr3 (1-44)||(35069364-35069407)
chr3 (1-44)||(43605610-43605653)
chr3 (1-44)||(47069058-47069101)
chr3 (1-44)||(52256786-52256829)
chr3 (1-43)||(3917818-3917860)
chr3 (2-44)||(4976743-4976785)
chr3 (1-43)||(10229009-10229051)
chr3 (1-43)||(28197018-28197060)
chr3 (1-43)||(33886404-33886446)
chr3 (1-39)||(34397736-34397774)
chr3 (1-43)||(48191146-48191188)
chr3 (1-47)||(53584009-53584055)
chr3 (1-42)||(9583457-9583498)
chr3 (1-42)||(11312643-11312684)
chr3 (3-44)||(40840220-40840261)
chr3 (1-41)||(7552649-7552689)
chr3 (3-43)||(30703143-30703183)
chr3 (1-41)||(35240084-35240124)
chr3 (3-43)||(42296763-42296803)
[»] scaffold0595 (1 HSPs)
scaffold0595 (1-44)||(396-439)
[»] scaffold0402 (1 HSPs)
scaffold0402 (1-44)||(1275-1318)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-44)||(39347-39390)
[»] chr6 (13 HSPs)
chr6 (1-44)||(2959044-2959087)
chr6 (1-44)||(5603481-5603524)
chr6 (1-44)||(8329592-8329635)
chr6 (1-44)||(8448176-8448219)
chr6 (1-44)||(8456980-8457023)
chr6 (1-44)||(13507344-13507387)
chr6 (1-44)||(29183709-29183752)
chr6 (1-43)||(659206-659248)
chr6 (1-43)||(1241647-1241689)
chr6 (1-43)||(2314633-2314675)
chr6 (1-43)||(8939678-8939720)
chr6 (1-43)||(31057884-31057926)
chr6 (3-44)||(30614948-30614989)
[»] chr2 (22 HSPs)
chr2 (1-44)||(727323-727366)
chr2 (1-44)||(12236172-12236215)
chr2 (1-43)||(17052609-17052652)
chr2 (1-44)||(33607094-33607137)
chr2 (1-44)||(35476524-35476567)
chr2 (1-44)||(36754999-36755042)
chr2 (1-44)||(39070070-39070113)
chr2 (1-44)||(43461368-43461411)
chr2 (1-44)||(44948070-44948113)
chr2 (1-43)||(4014847-4014889)
chr2 (1-43)||(13268009-13268051)
chr2 (1-43)||(15897266-15897308)
chr2 (1-43)||(23080132-23080174)
chr2 (2-44)||(37644268-37644310)
chr2 (1-43)||(43841746-43841788)
chr2 (1-42)||(7975048-7975089)
chr2 (1-42)||(8532159-8532200)
chr2 (1-42)||(36754775-36754816)
chr2 (1-42)||(38463192-38463233)
chr2 (3-43)||(2287345-2287385)
chr2 (1-41)||(23497546-23497586)
chr2 (1-41)||(36216787-36216827)
[»] scaffold0457 (1 HSPs)
scaffold0457 (1-43)||(6831-6873)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 294 - 406
Target Start/End: Complemental strand, 28191277 - 28191163
Alignment:
Q  294 ttgaaccttacagattttggcatgaaacaaagaaacaatctggtaa--tatcatcagatatgaatgtctgcatttgagtattttttgacaaagtctatac 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28191277 ttgaaccttacagattttggcatgaaacaaagaaacaatctggtaacatatcatcagatatgaatgtctgcatttgagtactttttgacaaagtctatac 28191178  T
Q  392 caagatttatatcct 406  Q
    |||||||||||||||    
T  28191177 caagatttatatcct 28191163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1650385 - 1650342
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||||||| |||||||||||||||    
T  1650385 cacacacacaagtggaggtaccggagttcgaaccccggtcatgg 1650342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1833353 - 1833396
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  1833353 cacacacacaagtggaggtatcggggttcgaaccccggtcatgg 1833396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5203645 - 5203602
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  5203645 cacacacacaagtggaggtatcggggttcgaaccccggtcatgg 5203602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 9054005 - 9054048
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  9054005 cacacacacaagtggaggtatcggggttcgaaccccggtcatgg 9054048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12665189 - 12665146
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||||||| |||||||||||||||    
T  12665189 cacacacacaagtggaggtaccggagttcgaaccccggtcatgg 12665146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40318819 - 40318862
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  40318819 cacacacacaagtggaggtatcggggttcgaaccccggtcatgg 40318862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4429975 - 4430017
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||| ||||||||||||||| ||||||||||||||||||    
T  4429975 cacacacataagtggaggtatcggggtttgaaccccggtcatg 4430017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24443901 - 24443942
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  24443901 cacacacacaagtggaggtaccggggtttgaaccccggtcat 24443942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4617800 - 4617843
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  4617800 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 4617843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6672335 - 6672292
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  6672335 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 6672292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 16496694 - 16496651
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  16496694 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 16496651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18474008 - 18473965
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  18474008 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 18473965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23074678 - 23074721
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  23074678 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 23074721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34930319 - 34930276
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  34930319 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 34930276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36246028 - 36246071
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  36246028 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 36246071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36569373 - 36569330
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  36569373 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 36569330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36854192 - 36854235
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  36854192 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 36854235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37941012 - 37940969
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||    
T  37941012 cacacacacaagtggaggtatcggggttcgaaccccgatcatgg 37940969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38975772 - 38975811
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtc 40  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  38975772 cacacacacaagtggaggtaccggagttcgaaccccggtc 38975811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 39150960 - 39151003
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  39150960 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 39151003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41408721 - 41408678
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||||||||| ||||    
T  41408721 cacacacacaagtggaggtatcggggttcgaaccccggttatgg 41408678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41562552 - 41562509
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||    
T  41562552 cacacacacaagtggaggtaccggagttcgaactccggtcatgg 41562509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42068635 - 42068592
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  42068635 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 42068592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42448305 - 42448262
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  42448305 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 42448262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1287409 - 1287367
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  1287409 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 1287367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4165053 - 4165011
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  4165053 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 4165011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20695517 - 20695559
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    ||||||||||||||||||||| || ||| ||||||||||||||    
T  20695517 cacacacacaagtggaggtataggggttcgaaccccggtcatg 20695559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26802428 - 26802386
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  26802428 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 26802386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26809978 - 26809936
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  26809978 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 26809936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26825005 - 26824963
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  26825005 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 26824963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36136896 - 36136937
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||| ||| ||| |||||||||||||    
T  36136896 cacacacacaagtggaggtaccggggttcgaaccccggtcat 36136937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36790349 - 36790390
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||| ||| ||| |||||||||||||    
T  36790349 cacacacacaagtggaggtaccggggttcgaaccccggtcat 36790390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 39528024 - 39527983
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||| ||| ||| |||||||||||||||    
T  39528024 cacacacaagtggaggtaccggggttcgaaccccggtcatgg 39527983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10393536 - 10393576
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtca 41  Q
    |||||||||||||||||||| ||| ||| ||||||||||||    
T  10393536 cacacacacaagtggaggtaccggggttcgaaccccggtca 10393576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37817470 - 37817427
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  37817470 cacacacacaagtggaggtatcggggttcgaaccccggtcatgg 37817427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2508168 - 2508210
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    ||||||||||||| |||||||||||||| ||||||||||||||    
T  2508168 cacacacacaagtagaggtatcggagttcgaaccccggtcatg 2508210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38216789 - 38216831
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  38216789 cacacacataagtggagttatcggagtttgaaccccggtcatg 38216831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35497670 - 35497711
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||| |||||||||||||||| ||||    
T  35497670 cacacacacaagtggaggtaccggagtttgaaccccgatcat 35497711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4312227 - 4312184
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||    
T  4312227 cacacacacaagtggaggtaccggagttcgaaccccagtcatgg 4312184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4977068 - 4977111
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  4977068 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 4977111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10096706 - 10096663
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||| ||||||||||||||| ||| |||||||||||||||    
T  10096706 cacacacataagtggaggtatcggggttcgaaccccggtcatgg 10096663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 23681104 - 23681061
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  23681104 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 23681061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24242619 - 24242662
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  24242619 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 24242662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 25063434 - 25063391
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  25063434 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 25063391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 27928252 - 27928209
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  27928252 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 27928209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31639136 - 31639179
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||    
T  31639136 cacacacataagtggaggtaccggagttcgaaccccggtcatgg 31639179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 34711589 - 34711632
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  34711589 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 34711632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37295220 - 37295177
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  37295220 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 37295177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4430769 - 4430811
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  4430769 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 4430811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4694721 - 4694763
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||    
T  4694721 cacacacacaagtggaggtagcggggtttgaatcccggtcatg 4694763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6317394 - 6317352
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  6317394 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 6317352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9998677 - 9998719
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  9998677 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 9998719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26738065 - 26738023
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  26738065 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 26738023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27817483 - 27817525
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  27817483 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 27817525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27849777 - 27849819
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  27849777 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 27849819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38953514 - 38953556
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  38953514 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 38953556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44814957 - 44814915
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  44814957 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 44814915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 2442854 - 2442813
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||| ||| ||||||| |||||||||||    
T  2442854 cacacacaagtggaggtaccggggtttgaatcccggtcatgg 2442813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 16501741 - 16501700
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||| ||| ||| |||||||||||||||    
T  16501741 cacacacaagtggaggtaccggggttcgaaccccggtcatgg 16501700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 33067424 - 33067465
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||| ||||||| |||||||| ||||||    
T  33067424 cacacacaagtggaggtaccggagttcgaaccccgatcatgg 33067465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 37708482 - 37708522
Alignment:
Q  2 acacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    ||||||||||||||||||| ||| ||| |||||||||||||    
T  37708482 acacacacaagtggaggtaccggggttcgaaccccggtcat 37708522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 39666932 - 39666972
Alignment:
Q  4 acacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    ||||||||||||||||||||| ||||||||| | |||||||    
T  39666932 acacacaagtggaggtatcggggtttgaaccacagtcatgg 39666972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1869910 - 1869867
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||||||| |||||||||||||||    
T  1869910 cacacacacaagtggaggtaccggagttcgaaccccggtcatgg 1869867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5723637 - 5723678
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||||||||||| |||| ||||||||    
T  5723637 cacacacacaagtggaggtatcggagttcgaactccggtcat 5723678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4069150 - 4069193
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  4069150 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 4069193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4106648 - 4106605
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  4106648 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 4106605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5508779 - 5508736
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  5508779 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 5508736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 17895728 - 17895685
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  17895728 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 17895685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19258518 - 19258475
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  19258518 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 19258475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21226159 - 21226116
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  21226159 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 21226116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31717391 - 31717348
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||    
T  31717391 cacacacataagtggaggtaccggagttcgaaccccggtcatgg 31717348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40012023 - 40012066
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  40012023 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 40012066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40656142 - 40656185
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  40656142 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 40656185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 1573876 - 1573918
Alignment:
Q  2 acacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||    
T  1573876 acacacacaagtggaggtaccggggttcgaaccccggtcatgg 1573918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2354831 - 2354873
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||||||| ||| |||| |||||||||    
T  2354831 cacacacacaagtggaggtatcggggttcgaactccggtcatg 2354873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4674343 - 4674385
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  4674343 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 4674385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7312487 - 7312529
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  7312487 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 7312529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 32251369 - 32251411
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||    
T  32251369 cacacacataagtggaggtatcggggttcgaaccccggtcatg 32251411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43133137 - 43133179
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  43133137 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 43133179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 45237024 - 45236982
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||    
T  45237024 cacatacacaagtggaggtatcggggttcgaaccccggtcatg 45236982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 43416324 - 43416364
Alignment:
Q  4 acacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    ||||||||||||||||| ||| ||| |||||||||||||||    
T  43416324 acacacaagtggaggtaccggggttcgaaccccggtcatgg 43416364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45041767 - 45041807
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtca 41  Q
    |||||||||||||||||||| ||| ||| ||||||||||||    
T  45041767 cacacacacaagtggaggtaccggggttcgaaccccggtca 45041807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 38814677 - 38814634
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  38814677 cacacacacaagtggaggtatcggggttcgaaccccggtcatgg 38814634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 46488151 - 46488193
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  46488151 cacacacacaagtggaggtaccggggtttgaaccccggtcatg 46488193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 51675701 - 51675743
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||||||| ||||||||||||||    
T  51675701 cacacacacaagtggaggtaccggagttcgaaccccggtcatg 51675743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 7512861 - 7512818
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  7512861 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 7512818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12315964 - 12316007
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||    
T  12315964 cacacacacaagtggaggtatcggggttcgaaccctggtcatgg 12316007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28983826 - 28983783
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||    
T  28983826 cacacacataagtggaggtaccggagttcgaaccccggtcatgg 28983783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35828368 - 35828325
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  35828368 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 35828325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 47462070 - 47462113
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  47462070 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 47462113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 51281560 - 51281517
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||    
T  51281560 cacacacacaagtggaggtatcggggttcgaactccggtcatgg 51281517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5333240 - 5333282
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  5333240 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 5333282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5396974 - 5397016
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  5396974 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 5397016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7944258 - 7944300
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  7944258 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 7944300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16476971 - 16477013
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  16476971 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 16477013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24712182 - 24712140
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  24712182 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 24712140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 31375206 - 31375164
Alignment:
Q  2 acacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||    
T  31375206 acacacacaagtggaggtaccggggttcgaaccccggtcatgg 31375164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34660825 - 34660867
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  34660825 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 34660867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34684296 - 34684254
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  34684296 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 34684254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39284609 - 39284651
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  39284609 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 39284651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 42154172 - 42154214
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  42154172 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 42154214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 1083601 - 1083560
Alignment:
Q  2 acacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    ||||||||||||||||||||||| ||| |||||||| |||||    
T  1083601 acacacacaagtggaggtatcggggttcgaaccccgatcatg 1083560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8017944 - 8017903
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||| |||||||||||||||||||  ||||||||||||    
T  8017944 cacacacaaaagtggaggtatcggagttctaaccccggtcat 8017903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 12821257 - 12821216
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||| ||| ||| |||||||||||||||    
T  12821257 cacacacaagtggaggtaccggggttcgaaccccggtcatgg 12821216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16971716 - 16971757
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||| ||| ||| |||||||||||||    
T  16971716 cacacacacaagtggaggtagcggggttcgaaccccggtcat 16971757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 21378380 - 21378339
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||| ||||||||||| ||||||| |||||||||||||||    
T  21378380 cacacataagtggaggtaccggagttcgaaccccggtcatgg 21378339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6487940 - 6487900
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtca 41  Q
    |||||||||||||||||||| ||| ||| ||||||||||||    
T  6487940 cacacacacaagtggaggtaccggggttcgaaccccggtca 6487900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18216438 - 18216395
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| |||||||||||||||| ||||||    
T  18216438 cacacacacaagtggaggtaccggagtttgaaccccgatcatgg 18216395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 39606499 - 39606456
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  39606499 cacacacacaagtggaggtatcggggttcgaaccccggtcatgg 39606456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 40685621 - 40685581
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    ||||||||| |||||||||||||||| ||||||||||||||    
T  40685621 cacacacaaatggaggtatcggagttcgaaccccggtcatg 40685581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1576468 - 1576425
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||    
T  1576468 cacacacataagtggaggtaacggagttcgaaccccggtcatgg 1576425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10635583 - 10635540
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  10635583 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 10635540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19338212 - 19338255
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  19338212 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 19338255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 20164107 - 20164150
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  20164107 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 20164150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21522411 - 21522368
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  21522411 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 21522368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29005184 - 29005141
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  29005184 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 29005141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42631019 - 42631062
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||    
T  42631019 cacacacacaagtggaggtatcggggttcgaaccccgatcatgg 42631062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 8214712 - 8214674
Alignment:
Q  6 acacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  8214712 acacacgtggaggtatcggggtttgaaccccggtcatgg 8214674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13555758 - 13555800
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  13555758 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 13555800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48314261 - 48314219
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  48314261 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 48314219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 49632649 - 49632607
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||    
T  49632649 cacacacacaagtggaggtatcggggttcgaacctcggtcatg 49632607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 50248123 - 50248081
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||    
T  50248123 cacacacacaagtggaggtatcggggttcgaacctcggtcatg 50248081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 51263847 - 51263889
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||    
T  51263847 cacacacataagtggaggtaccggagttcgaaccccggtcatg 51263889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 270357 - 270398
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||| ||| ||| |||||||||||||||    
T  270357 cacacacaagtggaggtaccggggttcgaaccccggtcatgg 270398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15952866 - 15952907
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||| ||||||| |||||||| ||||    
T  15952866 cacacacacaagtggaggtaccggagttcgaaccccgatcat 15952907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 11081004 - 11081036
Alignment:
Q  10 aagtggaggtatcggagtttgaaccccggtcat 42  Q
    ||||||||||||||| |||||||||||||||||    
T  11081004 aagtggaggtatcggggtttgaaccccggtcat 11081036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7791 - 7833
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||||||| ||| ||||||||||||||    
T  7791 cacacacacaagtggaggtatcggggttcgaaccccggtcatg 7833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11076499 - 11076457
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||||||| ||| ||||||||||||||    
T  11076499 cacacacacaagtggaggtatcggggttcgaaccccggtcatg 11076457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38485993 - 38486034
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  38485993 cacacacacaagtggaggtaccggagttcgaaccccggtcat 38486034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40559768 - 40559732
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccg 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  40559768 cacacacacaagtggaggtatcggagttcgaaccccg 40559732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 2096619 - 2096662
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  2096619 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 2096662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3440820 - 3440777
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  3440820 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 3440777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4232211 - 4232254
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  4232211 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 4232254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5998816 - 5998859
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  5998816 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 5998859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8381173 - 8381130
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  8381173 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 8381130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10473948 - 10473991
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  10473948 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 10473991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13525263 - 13525220
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  13525263 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 13525220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24650581 - 24650624
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  24650581 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 24650624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28266620 - 28266577
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||| | ||||||| |||||||||||||||    
T  28266620 cacacacacaagtggaggcaccggagttcgaaccccggtcatgg 28266577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29212099 - 29212142
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  29212099 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 29212142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30553002 - 30553045
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||    
T  30553002 cacacacacaagtggaggtatcggggttcgaactccggtcatgg 30553045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 32961012 - 32961055
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  32961012 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 32961055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35069407 - 35069364
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  35069407 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 35069364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43605610 - 43605653
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  43605610 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 43605653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 47069101 - 47069058
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  47069101 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 47069058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 52256786 - 52256829
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  52256786 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 52256829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3917860 - 3917818
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  3917860 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 3917818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 4976743 - 4976785
Alignment:
Q  2 acacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||    
T  4976743 acacacacaagtggaggtaccggggttcgaaccccggtcatgg 4976785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10229051 - 10229009
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  10229051 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 10229009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28197018 - 28197060
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  28197018 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 28197060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33886404 - 33886446
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  33886404 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 33886446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34397774 - 34397736
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggt 39  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  34397774 cacacacacaagtggaggtatcggggttcgaaccccggt 34397736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48191188 - 48191146
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    ||||||||||||||||||||  |||||| ||||||||||||||    
T  48191188 cacacacacaagtggaggtactggagttcgaaccccggtcatg 48191146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 53584055 - 53584009
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatggaat 47  Q
    |||||||||||||||||||||| | ||| | ||||||||||||||||    
T  53584055 cacacacacaagtggaggtatctgggttcgtaccccggtcatggaat 53584009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9583457 - 9583498
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||||||| |||  ||||||||||||    
T  9583457 cacacacacaagtggaggtatcggggttctaaccccggtcat 9583498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11312684 - 11312643
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||| ||| ||| |||||||||||||    
T  11312684 cacacacacaagtggaggtaccggggttcgaaccccggtcat 11312643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 40840261 - 40840220
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||| ||| ||| |||||||||||||||    
T  40840261 cacacacaagtggaggtaccggggttcgaaccccggtcatgg 40840220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7552689 - 7552649
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtca 41  Q
    ||||||||||||||||||||| || ||| ||||||||||||    
T  7552689 cacacacacaagtggaggtattggggttcgaaccccggtca 7552649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 30703183 - 30703143
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||| ||| ||| ||||||||||||||    
T  30703183 cacacacaagtggaggtaacggggttcgaaccccggtcatg 30703143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35240124 - 35240084
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtca 41  Q
    |||||||||||||||||||| ||| ||| ||||||||||||    
T  35240124 cacacacacaagtggaggtaccggggttcgaaccccggtca 35240084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 42296803 - 42296763
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||| ||| ||| ||||||||||||||    
T  42296803 cacacacaagtggaggtaccggggttcgaaccccggtcatg 42296763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 439 - 396
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  439 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1275 - 1318
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  1275 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 1318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 39347 - 39390
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  39347 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 39390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2959087 - 2959044
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  2959087 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 2959044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5603481 - 5603524
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||| | ||| |||||||||||||||    
T  5603481 cacacacacaagtggaggtatcagggttcgaaccccggtcatgg 5603524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8329592 - 8329635
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  8329592 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 8329635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8448176 - 8448219
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  8448176 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 8448219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8456980 - 8457023
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  8456980 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 8457023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 13507344 - 13507387
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| |||| ||||||||||    
T  13507344 cacacacacaagtggaggtatcggggttcgaacaccggtcatgg 13507387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 29183752 - 29183709
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||    
T  29183752 cacacacacaagtggagatatcggggttcgaaccccggtcatgg 29183709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 659248 - 659206
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    ||||||||||||| |||||| ||| ||||||||||||||||||    
T  659248 cacacacacaagtagaggtaccggggtttgaaccccggtcatg 659206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1241689 - 1241647
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  1241689 cacacacacaagtggaggtagcggggttcgaaccccggtcatg 1241647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2314633 - 2314675
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  2314633 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 2314675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8939720 - 8939678
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  8939720 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 8939678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31057926 - 31057884
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  31057926 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 31057884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 30614948 - 30614989
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    ||||||||||||||||||||||| || ||||||| |||||||    
T  30614948 cacacacaagtggaggtatcggaattcgaaccccagtcatgg 30614989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 727323 - 727366
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||||||| |||||||| ||||||    
T  727323 cacacacacaagtggaggtaccggagttcgaaccccgatcatgg 727366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12236215 - 12236172
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  12236215 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 12236172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17052652 - 17052609
Alignment:
Q  1 cacacacacaa-gtggaggtatcggagtttgaaccccggtcatg 43  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||    
T  17052652 cacacacacaaagtggaggtaccggagtttgaaccccggtcatg 17052609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 33607137 - 33607094
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||    
T  33607137 cacacacacaagtggaggtatcggggttcgaaccccagtcatgg 33607094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 35476524 - 35476567
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  35476524 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 35476567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36755042 - 36754999
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  36755042 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 36754999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 39070113 - 39070070
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  39070113 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 39070070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43461368 - 43461411
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||    
T  43461368 cacacacacaagtggaggtaccggggttcgaaccccggtcatgg 43461411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 44948113 - 44948070
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||    
T  44948113 cacacatacaagtggaggtaccggagttcgaaccccggtcatgg 44948070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4014847 - 4014889
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  4014847 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 4014889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 13268009 - 13268051
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  13268009 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 13268051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15897308 - 15897266
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  15897308 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 15897266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23080132 - 23080174
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  23080132 cacacacacaagtggaggtaccggggttcgaaccccggtcatg 23080174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 37644268 - 37644310
Alignment:
Q  2 acacacacaagtggaggtatcggagtttgaaccccggtcatgg 44  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||    
T  37644268 acacacacaagtggaggtatcggggttcgaaccccgatcatgg 37644310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43841746 - 43841788
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||||||||||||| |||| ||| |||||    
T  43841746 cacacacacaagtggaggtatcggagttcgaactccgatcatg 43841788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7975048 - 7975089
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||| ||| ||| |||||||||||||    
T  7975048 cacacacacaagtggaggtaccggggttcgaaccccggtcat 7975089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8532200 - 8532159
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||| ||| ||| |||||||||||||    
T  8532200 cacacacacaagtggaggtaccggggttcgaaccccggtcat 8532159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36754775 - 36754816
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||| ||| ||| |||||||||||||    
T  36754775 cacacacacaagtggaggtaccggggttcgaaccccggtcat 36754816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 38463233 - 38463192
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcat 42  Q
    |||||||||||||||||||||||| ||| |||||||| ||||    
T  38463233 cacacacacaagtggaggtatcggggttcgaaccccgatcat 38463192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 2287345 - 2287385
Alignment:
Q  3 cacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||||||||||||| ||| ||| ||||||||||||||    
T  2287345 cacacacaagtggaggtaccggggttcgaaccccggtcatg 2287385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 23497546 - 23497586
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtca 41  Q
    |||||||||||||||||||| ||| ||| ||||||||||||    
T  23497546 cacacacacaagtggaggtaccggggttcgaaccccggtca 23497586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36216787 - 36216827
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtca 41  Q
    |||||||||||||||||||| ||| ||| ||||||||||||    
T  36216787 cacacacacaagtggaggtaccggggttcgaaccccggtca 36216827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6873 - 6831
Alignment:
Q  1 cacacacacaagtggaggtatcggagtttgaaccccggtcatg 43  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||    
T  6873 cacacacataagtggaggtaccggagttcgaaccccggtcatg 6831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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