View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_low_1 (Length: 832)
Name: NF11405_low_1
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 193 - 816
Target Start/End: Complemental strand, 38484952 - 38484325
Alignment:
| Q |
193 |
tttagacaatgaagcaatgcccttaaaaacttaccatttaccttaatttaaagtgaaatgaatcacattcatgtctaattttatgtacatgcatccaatt |
292 |
Q |
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| T |
38484952 |
tttagacaatgaagcaatgcccttaaaaacttaccatttaccttaatttaaagtgaaatgaatctcattcatgtctaattttatgtacatgcatccaatt |
38484853 |
T |
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| Q |
293 |
ttgtgagtaactactattacnnnnnnnnaggggatgagtaaaactgtaaaaggattgggaaagatgaatgtgattgtgaatgcacgtgaacgtagagggg |
392 |
Q |
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| T |
38484852 |
ttcagagtaactactattacttttttttaggggatgagtaaaactgtaaaaggattgggaaagataaatgtgattgtgaatgcacgtgaacgtagagggg |
38484753 |
T |
|
| Q |
393 |
ctgaagttgatccatccatataaccctgtggggtatgattatgaatgatgagtgaaaaagtaaagtgaattccaaatggaagcacttatgcacacgtaaa |
492 |
Q |
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| T |
38484752 |
ctgaagttgatccatccatataaccctgtggggtatgattatgaatgatgagtgaaaaagtatagtgaattccaaatggaagcacttatgcacacgtaaa |
38484653 |
T |
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| Q |
493 |
agaagggaatccatcatgatcatcatcatcatgagtatgaccattaagcaatgatactacattacataata----tacccaccaaaaatcatatcctctc |
588 |
Q |
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| T |
38484652 |
agaagggaatccatcatgatcatcatcatcatgagtatgaccattaagcaatgatactacattacataatacttatacccaccaaaaatcatatcctctc |
38484553 |
T |
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| Q |
589 |
ccccttcattttcccagacaaaatgaaatcattactcaccgcaaaatatgcatctcattcccttcctactttggtttttcacaaacctaatcattccttt |
688 |
Q |
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| T |
38484552 |
ccccttcattttcccagacaaaatgaaatcattactcaccgcaaaatatgcatctcattcccttcctactttggtttttcacaaacctaatcattccttt |
38484453 |
T |
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| Q |
689 |
atttcaaaagaaatcactctagtctctaaacccttctagtattatccttcctcttcatcatgatcatgatgaacacctccttatcataatcatccaattc |
788 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484452 |
atttcaaaagaaaccactctagtctctaaacccttttagtattatccttcctcttcatcatgatcatgatgaacacctccttatcataatcatccaattc |
38484353 |
T |
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| Q |
789 |
ttttttcttgaactgcaaatcacatttc |
816 |
Q |
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| T |
38484352 |
ttttttcttgaactgcaaatcacatttc |
38484325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 38485169 - 38484979
Alignment:
| Q |
1 |
tgttgtgagaatgtccgtcacactccaacactcaagtcactttacaaatgaggtgggttgtgaaaattgtttggtagttgcggaatatcaactgtgatcg |
100 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38485169 |
tgttatgagaatgtccgtcacactccaaccctcaagtcactttgcaaatgaggtgggttgtgaaaattgtttggtagttgcggaatatcaactgtgatcg |
38485070 |
T |
|
| Q |
101 |
atgggatgccatgtgatcttgattaggttatcgggggctaaggggtaatacatgtgtgttactgggtctgcgtaccaggtgttatgtgatt |
191 |
Q |
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| T |
38485069 |
atgggatgccatgtgatcttgattaggttattgggggctaaggggtaatacatgtgtgttactgggtctgcgtaccaggtgttatgtgatt |
38484979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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