View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_low_10 (Length: 462)
Name: NF11405_low_10
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 2 - 445
Target Start/End: Original strand, 22102227 - 22102670
Alignment:
| Q |
2 |
atgtacatgagaattgatatgcattgaattaaagtatattctaaataagttcatctttttatacctaatttaagacatctgtgtcaattgtcaaattcaa |
101 |
Q |
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| T |
22102227 |
atgtacatgagaattgatatgcattaaattaaagtatattctaaataagttcatctttttatacctaatttaagacatctgtgtcaattgtcaaattcaa |
22102326 |
T |
|
| Q |
102 |
ttacttctctagttcattcatttataatgcatgaatctgctcgcattagccttatgcactcacacttgctatataatgttgtaggaacaagtgcttgctg |
201 |
Q |
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| T |
22102327 |
ttacttctctagttcattcatttataatgcatgaatctgctggcattagccttatgcactcacacttgctatataatgttgtaggaacaagtgcttgctg |
22102426 |
T |
|
| Q |
202 |
aacaacttaaaaaatccaggttacaggtacatgacatcacttataattttaatctctttttcattctgcaagatatcacaagtaaaagagaataaatata |
301 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22102427 |
aacaacttaagagatccaggttacaggtacatgacatcacttataattttaatctctttttcattctgcaagatatcacaagtaaaagagaatatatata |
22102526 |
T |
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| Q |
302 |
aataaagcccatagatagtttttggaattaaagttatcatatgttatatatgtgttataaaacctaacttagagtttctctaaaaatagttcagttggct |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || ||||||||||||||| |
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| T |
22102527 |
aataaagcccatagatagtttttggaattaaagttatcatatgttatatatgtgttgtaaaacctaatttagagtttctctgaacatagttcagttggct |
22102626 |
T |
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| Q |
402 |
gagacaatacattgttatatgtaagggtcgaagttcgaacctcg |
445 |
Q |
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| T |
22102627 |
aggataatacattgttatatgtaagggtcgagattcgaacctcg |
22102670 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 444
Target Start/End: Original strand, 36190080 - 36190116
Alignment:
| Q |
408 |
atacattgttatatgtaagggtcgaagttcgaacctc |
444 |
Q |
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| T |
36190080 |
atacattgttatatgtaagggtcgaggttcgaacctc |
36190116 |
T |
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