View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_low_13 (Length: 368)
Name: NF11405_low_13
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 35430217 - 35430568
Alignment:
| Q |
1 |
gaagaatgtacacagagaaagtgtacgtcatctagaaaattttaatcatatgaatgtacatcatctagaaaatcttcagtagtcacatagtttttcctgt |
100 |
Q |
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| T |
35430217 |
gaagaatgtacacagagaaagtgtacgtcatctagaaaattttaatcatatgaatgtacatcatctagaaaatcttcagcagtcacatagtttttcccat |
35430316 |
T |
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| Q |
101 |
tagtaatcttaataatgatgtttggtagtttggaggggaggggaagggaggcaacatagtcacattggtttccccattagtaatcttcctaatgatgaaa |
200 |
Q |
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| T |
35430317 |
tagtaatcttaataatgatgtttggtagtttggaggggaggggaagggaggcaacatagtcacattggttt-ccctttagtaatcttcctaacgatgaaa |
35430415 |
T |
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| Q |
201 |
tataagagaaaatagagaaatctttcnnnnnnntttaaagagtatattttccctcccctccaaactcctaaacaaaacctaagttcactccgttttacat |
300 |
Q |
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| T |
35430416 |
tataagagaaaattgagaaatcttttaaaaaaaattaaagagtatattttccctcccctctaaactcctaaacaaaacctaagttcactccg-------- |
35430507 |
T |
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| Q |
301 |
cattatgttcatttatatctatgtacattcaggttcgctaatgatccattccctctctgtgct |
363 |
Q |
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| T |
35430508 |
--ttatgttcatttatatttctgtacattcaggttcgctaatgatccattccctctctgtgct |
35430568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 26571357 - 26571391
Alignment:
| Q |
251 |
ccctcccctccaaactcctaaacaaaacctaagtt |
285 |
Q |
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| T |
26571357 |
ccctcccctccaaactcccaaacaaaacctaagtt |
26571391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 8828770 - 8828798
Alignment:
| Q |
257 |
cctccaaactcctaaacaaaacctaagtt |
285 |
Q |
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| T |
8828770 |
cctccaaactcctaaacaaaacctaagtt |
8828798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 16625638 - 16625670
Alignment:
| Q |
119 |
tgtttggtagtttggaggggaggggaagggagg |
151 |
Q |
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| T |
16625638 |
tgtttgggagtttggaggggaggggaagggagg |
16625670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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