View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_low_15 (Length: 364)
Name: NF11405_low_15
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 4677390 - 4677060
Alignment:
| Q |
19 |
ataatacatttattcaataactttatatgttaaatcacaaaaaattaatgttgatcatttaaatcaagtataagtaaacaatttaattaagtaggtatca |
118 |
Q |
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| T |
4677390 |
ataatacatttattcaataactttatatgttaaatcacaaaaaattaatgttgatcattaaaatcaagtataagtaaacaatttaattaagtaggtatca |
4677291 |
T |
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| Q |
119 |
tataggtacataattttccaccttttcttacaaaactctaaaataaaataaacccgacactctcttaaattatgtcttattacgaatggcatgttctccc |
218 |
Q |
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| T |
4677290 |
tataggtacataatcttccaccttttattacaaaactctaaaataaaataaacccgacactctcttaaattatgtcttattacgaatggcatgttctccc |
4677191 |
T |
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| Q |
219 |
tcaactcaacaatatactatgattataacatgaaacaacctcaaacattaaattgagccaataattgtcctatccttcgaaagtcaaatacaaattattt |
318 |
Q |
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| T |
4677190 |
t-----caacaatatactatgattataacataaaacaacctcaaacattaaattgagcccataattgtcctatccttcgaaagtcaaatacaaattattt |
4677096 |
T |
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| Q |
319 |
ttgtacgtagtatatatgaaggtgaaggcctctctg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4677095 |
ttgtacgtagtatatatgaaggtgaaggcctctctg |
4677060 |
T |
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