View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_low_17 (Length: 341)
Name: NF11405_low_17
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 107 - 281
Target Start/End: Original strand, 39281963 - 39282141
Alignment:
| Q |
107 |
ccattgtggggtatggtgtttggtaaaatgcctacgagaaaaatctggtgtt----atcgcatgttttttggtaagaattagaagacaaatgttttacaa |
202 |
Q |
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| T |
39281963 |
ccattgtgggataaggtgtttggtaaaatgcctacgagaaaaatctggtgtttagcatcacatgttttttggtaagaattagaagacaaatgttttacaa |
39282062 |
T |
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| Q |
203 |
catgtgttgctcatattgtgatagatacaataatatgtcatggacatagttttgaaagtgttcgataaaatgcccatga |
281 |
Q |
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| T |
39282063 |
catgtgttgctcatattatgatagatacaataatatgtcatggacatagttttgaaagtgtttgataaaatgcccatga |
39282141 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 39281857 - 39281896
Alignment:
| Q |
1 |
tttcagcagattttgtgctgctgagaatcaattgagttca |
40 |
Q |
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| T |
39281857 |
tttcagcagattttgtgctgctgagaatcaattgagttca |
39281896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 16700879 - 16700978
Alignment:
| Q |
121 |
ggtgtttggtaaaatgcctacgagaaaaatctggtgtt----atcgcatgttttttggtaagaattagaagacaaatgttttacaacatgtgttgctcat |
216 |
Q |
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| T |
16700879 |
ggtgtttggtaaaatgcctatgaataaaatttggtgtttagcatcacatg-tttttggtaagagttaaaagac-aatgtttttcaacatgtgttgctcat |
16700976 |
T |
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