View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11405_low_19 (Length: 328)

Name: NF11405_low_19
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11405_low_19
NF11405_low_19
[»] chr2 (1 HSPs)
chr2 (17-307)||(37602995-37603285)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 37603285 - 37602995
Alignment:
Q  17 cataggcctaaaagatggaactgtgattctaagtgaaggagggccttctggtaatttagccaaagaatctataaaagtaggccattgcatacaaggtgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37603285 cataggcctaaaagatggaactgtgattctaagtgaaggagggccttctggtaatttagccaaagaatctataaaagtaggccattgcatacaaggtgtt 37603186  T
Q  117 atgctaaaatctaaaatatgtacccttttgaatcccttaattgacttgaaaatttcattgttggaagcacaaaaaccaaacctatgccaaggaattaaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37603185 atgctaaaatctaaaatatgtacccttttgaatcccttaattgacttgaaaatttcattgttggaagcacaaaaaccaaacctatgccaaggaattaaat 37603086  T
Q  217 caacatacccggcgagttcggtaacggacatcaaccttctttgaattgtgtagttacttcctttgaaattcattgaagtaggacaaatcct 307  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37603085 caacatacccggcgagttcggtaacggacatcaatcttctttgaattgtgtagttacttcctttgaaattcattgaagtaggacaaatcct 37602995  T

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