View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11405_low_2 (Length: 782)
Name: NF11405_low_2
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 4e-99; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 10 - 205
Target Start/End: Complemental strand, 10054119 - 10053924
Alignment:
| Q |
10 |
gagatgaaggaaaattaagaatggtgaattggttatttctttgtgaatgaatggtaactaacagtaatgagtggtaatgtgcagttgtagaagcaagtat |
109 |
Q |
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| T |
10054119 |
gagatgaaggaaaattaagaatggtgaattggttttttctttgtgaatgaatggtaactaacagtaatgagtggttaggtgcagttgtagaagcaagtat |
10054020 |
T |
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| Q |
110 |
ttataggaaaaaatgaaatgaaggaattgaaatgtaactaacaagttgtggaagtttctttaaaaccaaagctgtggaaagtaaaatcgagaagag |
205 |
Q |
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| T |
10054019 |
ttataggaaaaaatgaaatgaaggaattgaaatgtaactaacaagttgtggaagtttctttaaaaccaaagctgtggaaagtaaaatcgagaagag |
10053924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 627 - 766
Target Start/End: Complemental strand, 10053529 - 10053390
Alignment:
| Q |
627 |
gctgatggtgaggcggtagtggtcaacgtcgatcaacggtgctcaacgtcagaactccatcatgatccaataggtctatgttgtggaaccatcgaagaag |
726 |
Q |
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| T |
10053529 |
gctgatggtgaggcggtagtggtcaacgtcgatcaacggtgctcaacgtcagaactccatcatgatccaatagatctatgttgtgggaccatcgaagaac |
10053430 |
T |
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| Q |
727 |
cgttgtgctctgttgttgattgtcagagcaaccaccttgt |
766 |
Q |
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| T |
10053429 |
cgttgtgctctgttgttgattgtcagagcaaccaccttgt |
10053390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 359 - 430
Target Start/End: Complemental strand, 10053770 - 10053699
Alignment:
| Q |
359 |
ggaatgtttttatgagtcaaccgtggtagtcaatgttgcaaaaaataatcatggcagtcaaccgtattgttg |
430 |
Q |
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| T |
10053770 |
ggaatgtttttatgagtcaaccgtggtagtcaatgttgcaaaaaataatcatggtagtcaaccgtattgttg |
10053699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 10053869 - 10053820
Alignment:
| Q |
260 |
ttcaaataaaatgtgtctagaggggcttcattacccacttaacatttttg |
309 |
Q |
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| T |
10053869 |
ttcaaataaaatgtgtctagaggggcttcattacccacttaacatttttg |
10053820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 515 - 547
Target Start/End: Complemental strand, 10053614 - 10053582
Alignment:
| Q |
515 |
ccatggtagactggtagtcaatggttttgttgt |
547 |
Q |
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| T |
10053614 |
ccatggtagactggtagtcaatggttttgttgt |
10053582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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