View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11405_low_21 (Length: 296)
Name: NF11405_low_21
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11405_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 36542137 - 36541869
Alignment:
| Q |
18 |
atatccatcacgattgttacagtgaagagaaatggggaaaagagtaaaagaaaatgagtgaggcatgttgatctctacgtgaagtttgtgcggtgtttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36542137 |
atatccatcacgattgttacagtgaagagaaatggggaaaagagtaaaagaaaacgagtgaggcatgttgatctctacgtgaagtttgtgcggtatttta |
36542038 |
T |
|
| Q |
118 |
atcatatatggagttccaggtcataaaatggataaggaacagtggaacatgaaagataacatccatatctataacttttatgaagacaccaaagtccaat |
217 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36542037 |
atcatatatggagttccaggtcacaaaatggataaggaacagtggaacatgaaagataacatccatatctagaacttttatgaagacaccaaagtccaat |
36541938 |
T |
|
| Q |
218 |
gtggtctacaaaaaggtgaaaaatgtaattcatgtgatatttattttctatcaaggtggttgatctctg |
286 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36541937 |
gtggcctacaaaaaggtgaaaaatgtaattcatgtgatatttatttcctatcaaggtggttgatctctg |
36541869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 32689205 - 32689033
Alignment:
| Q |
45 |
agaaatggggaaaagagtaaaagaaaatgagtgaggcatgttgatctctacgtgaagtttgtgcggtgttttaatcatatatggagttccaggtcataaa |
144 |
Q |
| |
|
|||||||| |||||||| |||||| | ||||||||||| |||||||||| || |||||||||||||||||||||||||| |||| ||| | | | |
|
|
| T |
32689205 |
agaaatggaaaaaagagtgaaagaacactagtgaggcatgctgatctctacatgttatttgtgcggtgttttaatcatatatgaagttgtaggactcata |
32689106 |
T |
|
| Q |
145 |
atggataaggaacagtggaacatgaaagataacatccatatctataacttttatgaagacaccaaagtccaat |
217 |
Q |
| |
|
||||| | | |||||||| |||||| | ||||||||||| | ||||| ||| ||||||||||||||||| |
|
|
| T |
32689105 |
atggagataggccagtggaatatgaaatttcacatccatatccaacactttcatgcagacaccaaagtccaat |
32689033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 36542184 - 36542148
Alignment:
| Q |
18 |
atatccatcacgattgttacagtgaagagaaatgggg |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36542184 |
atatccatcacgattgttacagtgaagagaaatgggg |
36542148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 15692449 - 15692408
Alignment:
| Q |
40 |
tgaagagaaatggggaaaagagtaaaagaaaatgagtgaggc |
81 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| |||| |
|
|
| T |
15692449 |
tgaagagaaacggggaaaagagtaaaagaatatgagtaaggc |
15692408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 32007698 - 32007790
Alignment:
| Q |
39 |
gtgaagagaaatggggaaaagagtaaaagaaaatgagtgaggcatgttgatctctacgtga-agtttgtgcggtgttttaatcatatatggagt |
131 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||| ||||| | ||||||||||| ||| ||| |||||| |||||||||||||||||| |
|
|
| T |
32007698 |
gtgaagagaaattgggaaaagaggaaaagaacatgatcgaggcgttttgatctctacatgactttttttgcggt-atttaatcatatatggagt |
32007790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 31343711 - 31343748
Alignment:
| Q |
170 |
aagataacatccatatctataacttttatgaagacacc |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31343711 |
aagataacatccatatctataactttcatgaagacacc |
31343748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 15871391 - 15871350
Alignment:
| Q |
169 |
aaagataacatccatatctataacttttatgaagacaccaaa |
210 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
15871391 |
aaagctaacatgcatatctacaacttttatgaagacaccaaa |
15871350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 16999737 - 16999692
Alignment:
| Q |
161 |
ggaacatgaaagataacatccatatctataacttttatgaagacac |
206 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||| |||||||||| |
|
|
| T |
16999737 |
ggaaaatgaaagataacattcatatctacaactttcatgaagacac |
16999692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University