View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11405_low_22 (Length: 287)

Name: NF11405_low_22
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11405_low_22
NF11405_low_22
[»] chr3 (23 HSPs)
chr3 (70-271)||(25307173-25307370)
chr3 (3-110)||(4494121-4494229)
chr3 (3-108)||(29525942-29526048)
chr3 (3-110)||(41443075-41443183)
chr3 (3-109)||(31104743-31104850)
chr3 (153-271)||(25279668-25279786)
chr3 (3-107)||(34307428-34307533)
chr3 (3-110)||(39713921-39714029)
chr3 (6-110)||(32363013-32363118)
chr3 (3-99)||(9692804-9692901)
chr3 (3-107)||(34456869-34456974)
chr3 (4-105)||(25188313-25188416)
chr3 (5-104)||(27168572-27168672)
chr3 (3-108)||(32145872-32145978)
chr3 (20-109)||(39099413-39099503)
chr3 (67-109)||(16141897-16141939)
chr3 (3-80)||(20547905-20547983)
chr3 (3-80)||(44856031-44856109)
chr3 (3-58)||(5114156-5114211)
chr3 (3-58)||(41309195-41309250)
chr3 (3-80)||(27541417-27541495)
chr3 (56-101)||(53718140-53718185)
chr3 (10-109)||(33472304-33472404)
[»] chr7 (24 HSPs)
chr7 (3-108)||(12007072-12007178)
chr7 (3-107)||(32777594-32777699)
chr7 (4-107)||(29723812-29723916)
chr7 (4-107)||(2008719-2008823)
chr7 (3-110)||(15325524-15325632)
chr7 (8-110)||(33845126-33845229)
chr7 (8-108)||(27570427-27570528)
chr7 (3-111)||(33057458-33057567)
chr7 (3-110)||(34978375-34978483)
chr7 (3-108)||(45419947-45420053)
chr7 (3-107)||(37352189-37352294)
chr7 (6-104)||(21103094-21103193)
chr7 (6-104)||(28249460-28249559)
chr7 (3-107)||(13152671-13152777)
chr7 (3-110)||(43081774-43081882)
chr7 (3-109)||(26749083-26749190)
chr7 (41-107)||(8904348-8904415)
chr7 (3-80)||(3148805-3148882)
chr7 (3-107)||(43807700-43807805)
chr7 (4-107)||(46880982-46881086)
chr7 (3-80)||(38956533-38956611)
chr7 (43-104)||(49103479-49103541)
chr7 (3-52)||(4292506-4292555)
chr7 (6-58)||(43025421-43025473)
[»] chr2 (20 HSPs)
chr2 (3-110)||(11965872-11965980)
chr2 (4-110)||(36587355-36587462)
chr2 (4-110)||(14871951-14872058)
chr2 (6-108)||(31578516-31578619)
chr2 (3-109)||(37316700-37316807)
chr2 (7-107)||(37731087-37731188)
chr2 (3-104)||(8847566-8847669)
chr2 (12-110)||(14877077-14877176)
chr2 (6-107)||(44239118-44239220)
chr2 (3-105)||(18510754-18510857)
chr2 (3-109)||(30831833-30831940)
chr2 (38-107)||(2427886-2427956)
chr2 (3-108)||(26480976-26481082)
chr2 (18-111)||(39234063-39234157)
chr2 (12-107)||(1079010-1079106)
chr2 (3-80)||(18254124-18254202)
chr2 (3-58)||(7698249-7698304)
chr2 (6-85)||(32944414-32944493)
chr2 (3-80)||(37003689-37003766)
chr2 (3-108)||(19916734-19916843)
[»] chr4 (29 HSPs)
chr4 (3-109)||(51255825-51255932)
chr4 (3-110)||(18316016-18316124)
chr4 (3-110)||(38519872-38519980)
chr4 (3-108)||(5386451-5386557)
chr4 (3-107)||(26600086-26600191)
chr4 (3-109)||(29227128-29227235)
chr4 (3-105)||(41262234-41262337)
chr4 (5-107)||(50506470-50506572)
chr4 (3-111)||(52204929-52205038)
chr4 (10-108)||(22813608-22813707)
chr4 (3-109)||(39158184-39158291)
chr4 (3-109)||(51577693-51577800)
chr4 (4-108)||(10146975-10147080)
chr4 (3-103)||(54000777-54000878)
chr4 (3-110)||(14443277-14443385)
chr4 (3-101)||(2738161-2738260)
chr4 (8-110)||(19651803-19651906)
chr4 (3-109)||(50050715-50050822)
chr4 (3-108)||(2004075-2004181)
chr4 (33-106)||(21014106-21014180)
chr4 (6-80)||(36130268-36130342)
chr4 (6-110)||(1816560-1816665)
chr4 (3-71)||(149409-149477)
chr4 (6-58)||(38376428-38376480)
chr4 (4-98)||(5932660-5932755)
chr4 (3-80)||(26732303-26732381)
chr4 (3-52)||(42395981-42396030)
chr4 (3-107)||(55266104-55266209)
chr4 (6-58)||(5622539-5622591)
[»] chr6 (15 HSPs)
chr6 (3-110)||(18064974-18065082)
chr6 (3-109)||(33712399-33712506)
chr6 (3-110)||(5739648-5739756)
chr6 (6-107)||(14910258-14910359)
chr6 (6-108)||(8505659-8505763)
chr6 (3-107)||(8645387-8645492)
chr6 (3-111)||(11635418-11635527)
chr6 (4-111)||(1286993-1287101)
chr6 (6-107)||(17182180-17182282)
chr6 (10-66)||(3772441-3772497)
chr6 (3-80)||(552871-552949)
chr6 (3-52)||(3853251-3853300)
chr6 (3-103)||(8990986-8991087)
chr6 (3-103)||(9015433-9015534)
chr6 (4-103)||(12588265-12588367)
[»] chr8 (28 HSPs)
chr8 (3-108)||(33451451-33451556)
chr8 (3-107)||(44090965-44091070)
chr8 (3-110)||(15716860-15716968)
chr8 (3-109)||(26026975-26027082)
chr8 (3-109)||(33107752-33107859)
chr8 (3-108)||(44061796-44061902)
chr8 (6-109)||(12241154-12241258)
chr8 (10-104)||(9629649-9629744)
chr8 (3-108)||(1068685-1068791)
chr8 (7-107)||(34435624-34435725)
chr8 (4-109)||(28772011-28772117)
chr8 (6-110)||(25987671-25987776)
chr8 (3-107)||(37172139-37172244)
chr8 (3-86)||(44825521-44825604)
chr8 (3-106)||(2730849-2730953)
chr8 (3-79)||(5600903-5600979)
chr8 (3-79)||(5639641-5639717)
chr8 (3-85)||(45405894-45405976)
chr8 (3-107)||(9630202-9630307)
chr8 (3-106)||(17775312-17775416)
chr8 (3-58)||(22719518-22719573)
chr8 (54-107)||(11134713-11134767)
chr8 (6-107)||(42652675-42652777)
chr8 (6-111)||(36873996-36874102)
chr8 (38-98)||(4672105-4672166)
chr8 (6-58)||(27854706-27854758)
chr8 (3-78)||(29025338-29025414)
chr8 (3-51)||(39856116-39856164)
[»] scaffold0618 (1 HSPs)
scaffold0618 (3-107)||(8840-8945)
[»] chr1 (16 HSPs)
chr1 (3-109)||(47642492-47642599)
chr1 (6-103)||(7918953-7919051)
chr1 (3-110)||(48983552-48983660)
chr1 (3-109)||(40439725-40439832)
chr1 (5-107)||(48858904-48859007)
chr1 (4-107)||(5771631-5771735)
chr1 (10-107)||(38878788-38878886)
chr1 (3-109)||(4213151-4213258)
chr1 (3-74)||(17082664-17082735)
chr1 (6-108)||(42468674-42468777)
chr1 (3-100)||(4857989-4858087)
chr1 (7-97)||(23332352-23332443)
chr1 (3-106)||(19442590-19442694)
chr1 (6-108)||(27742697-27742794)
chr1 (43-101)||(47990222-47990282)
chr1 (3-80)||(31088259-31088337)
[»] chr5 (21 HSPs)
chr5 (3-109)||(17097688-17097794)
chr5 (3-103)||(12739851-12739951)
chr5 (3-103)||(12802674-12802774)
chr5 (6-105)||(42446180-42446280)
chr5 (4-106)||(39195824-39195927)
chr5 (3-107)||(31748415-31748520)
chr5 (3-106)||(21210897-21211001)
chr5 (10-108)||(32872784-32872883)
chr5 (3-104)||(19981876-19981978)
chr5 (6-104)||(13089672-13089771)
chr5 (3-108)||(11954510-11954616)
chr5 (3-85)||(611943-612025)
chr5 (3-107)||(16971987-16972092)
chr5 (3-103)||(36562944-36563045)
chr5 (3-58)||(5168261-5168316)
chr5 (3-58)||(27487965-27488020)
chr5 (3-50)||(39054665-39054712)
chr5 (3-80)||(26791159-26791237)
chr5 (3-80)||(28306047-28306125)
chr5 (6-98)||(35075474-35075567)
chr5 (33-108)||(32284708-32284783)
[»] scaffold0276 (1 HSPs)
scaffold0276 (3-107)||(1723-1828)
[»] scaffold0201 (1 HSPs)
scaffold0201 (3-107)||(8551-8656)
[»] scaffold0034 (1 HSPs)
scaffold0034 (4-105)||(101790-101891)
[»] scaffold0128 (1 HSPs)
scaffold0128 (4-108)||(11014-11119)
[»] scaffold0432 (1 HSPs)
scaffold0432 (3-110)||(6404-6512)
[»] scaffold0184 (1 HSPs)
scaffold0184 (38-107)||(13444-13514)
[»] scaffold0078 (1 HSPs)
scaffold0078 (38-107)||(59330-59400)
[»] scaffold0110 (1 HSPs)
scaffold0110 (3-104)||(28217-28319)
[»] scaffold0056 (1 HSPs)
scaffold0056 (3-80)||(76534-76612)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 70 - 271
Target Start/End: Original strand, 25307173 - 25307370
Alignment:
Q  70 aagttgtcacaagaaaagttgttcaaataacattgctctttannnnnnnnngtccaactacaattcagttgttagaagagtgggcatggcatataccgat 169  Q
    ||||||||||||||||  |||||||||||||||||||||||          |||||||||||||| |||||||||||||||||||||| |||||||| ||    
T  25307173 aagttgtcacaagaaagattgttcaaataacattgctcttt----ttttttgtccaactacaatttagttgttagaagagtgggcatgacatataccaat 25307268  T
Q  170 ttggtgcatttaacgctaggttgggtcgcctaattttcaatttcaatgacactcattaccattctccttttaattcaactcattgaattatgacatattt 269  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  25307269 ttggtgcatttaaggctaggttgggtcgcctaattttcaattccaatgacactcattaacattctccttttaattaaactcattgaattatgacatattt 25307368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 4494229 - 4494121
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||| ||||||||||||||| |||||  |||| |||| |||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  4494229 ttctctttctattgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaataaca 4494130  T
Q  102 ttgctcttt 110  Q
    |||||||||    
T  4494129 ttgctcttt 4494121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 29525942 - 29526048
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||| ||||||| |||||| ||||||||| ||| |||||| |||||||||||||||||||||||||||| |||  ||||| |||||||||    
T  29525942 ttctctctctattgttttgatttttgtgccactatctaaatttttttgtaaaatttggttgtccaacaagttgtcacaataaatggttgtacaaataaca 29526041  T
Q  102 ttgctct 108  Q
    |||||||    
T  29526042 ttgctct 29526048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 41443183 - 41443075
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataaca 101  Q
    |||||||||||||| ||||||| |||||||| || |||| |||||||||||||||| ||||||||| | |||||||||||||| | ||||||||||| ||    
T  41443183 ttctctctctattgttttgatttttgtgcaaatacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatgattgttcaaatatca 41443084  T
Q  102 ttgctcttt 110  Q
    |||||||||    
T  41443083 ttgctcttt 41443075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 31104743 - 31104850
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaag-aaaagttgttcaaataaca 101  Q
    |||||||||||||| ||||||| |||||  |||| |||| |||||| ||||||||| |||||| ||||| |||||||||| |||||||||||||||||||    
T  31104743 ttctctctctattgttttgatttttgtgtcactacctaaatttcttcgtataatttagttgtcaaacaaattgtcacaagaaaaagttgttcaaataaca 31104842  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  31104843 ttgctctt 31104850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 25279668 - 25279786
Alignment:
Q  153 gcatggcatataccgatttggtgcatttaacgctaggttgggtcgcctaattttcaatttcaatgacactcattaccattctccttttaattcaactcat 252  Q
    |||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||   || | ||||||| | |||||||||||||||| | | |||    
T  25279668 gcatggcatatacccatttggtgcatttaaggctatgttgggttgcctaattttcaatcctaagggcactcatgagcattctccttttaattaagcacat 25279767  T
Q  253 tgaattatgacatatttat 271  Q
    || ||||||||||||||||    
T  25279768 tgtattatgacatatttat 25279786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 34307533 - 34307428
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataaca 101  Q
    |||||| |||||||||||| || ||||   |||| |||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||    
T  34307533 ttctctttctattgctttggtttttgtatcactacctaaatttctttgtataatttggttgtccaataagttgtcacaagaaaggattgttcaaataaca 34307434  T
Q  102 ttgctc 107  Q
    ||||||    
T  34307433 ttgctc 34307428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 39714029 - 39713921
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||||||||||| |||||  |||||||||  || ||||||||||||||||||||||||| || |||||| |||  |||||||||||||||    
T  39714029 ttctctctctattgctttgatttttgtgttactatctaaaattttttgtataatttggttgtccaacaaattatcacaaaaaatggttgttcaaataaca 39713930  T
Q  102 ttgctcttt 110  Q
    ||| |||||    
T  39713929 ttgttcttt 39713921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 32363013 - 32363118
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataacattg 104  Q
    ||||||||||||||||||  || ||| |||| |||| | |||||||||||| ||||||||||| || |||||||| ||||| |||||||||||||||||     
T  32363013 tctctctattgctttgatatttatgccactacctaaatctctttgtataatgtggttgtccaataaattgtcacatgaaaaggttgttcaaataacattt 32363112  T
Q  105 ctcttt 110  Q
    ||||||    
T  32363113 ctcttt 32363118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 9692804 - 9692901
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataa 99  Q
    |||||||||||||||||||||| |||||  |||  |||| |||||||||||||||| |||||| || | ||||||||||||||  |||||||||||||    
T  9692804 ttctctctctattgctttgatttttgtgtcactgcctaactttctttgtataatttagttgtctaaaaggttgtcacaagaaatggttgttcaaataa 9692901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 34456869 - 34456974
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||||||| ||| |||||| | || |||| |||||||||||||||| |||||| || |  ||||||||||||| | ||||||||||| ||    
T  34456869 ttctctctctattgctttaatttttgtgccaatacctaaatttctttgtataatttagttgtctaaaagattgtcacaagaaataattgttcaaatatca 34456968  T
Q  102 ttgctc 107  Q
    ||||||    
T  34456969 ttgctc 34456974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 25188416 - 25188313
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa--gttgttcaaataaca 101  Q
    ||||||||||||||||||||| | |||  | || |||| ||||||||||| |||| |||||| || | |||||||||| ||||  |||||||||||||||    
T  25188416 tctctctctattgctttgattttggtgtcattacctaaatttctttgtattatttagttgtctaataggttgtcacaaaaaaaaggttgttcaaataaca 25188317  T
Q  102 ttgc 105  Q
    ||||    
T  25188316 ttgc 25188313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 27168672 - 27168572
Alignment:
Q  5 ctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacatt 103  Q
    ||||||||||| |||||||| |||||| ||||| ||| |  |||||||||||||||||||  || ||||||||| || |||  |||||||||||||||||    
T  27168672 ctctctctattactttgatttttgtgccactatttaaatccctttgtataatttggttgtataagaagttgtcataataaagggttgttcaaataacatt 27168573  T
Q  104 g 104  Q
    |    
T  27168572 g 27168572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 32145978 - 32145872
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||| ||||||| |||||  |||| |||| |||||||||| |||||  || |||||||||||||| |   |||  |||||||||||||||    
T  32145978 ttctctctctattgttttgatttttgtgtcactacctaaatttctttgtaaaatttaattatccaacaagttgtccccgtaaatggttgttcaaataaca 32145879  T
Q  102 ttgctct 108  Q
    |||||||    
T  32145878 ttgctct 32145872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 39099413 - 39099503
Alignment:
Q  20 tgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattgctctt 109  Q
    ||||| |||| | |||| |||| ||||||||||||||||  |||||||| | |||||||||| ||| | ||||||||||||||||||||||    
T  39099413 tgatttttgtaccactacctaaatttctttgtataatttaattgtccaaaatgttgtcacaaaaaataattgttcaaataacattgctctt 39099503  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 16141939 - 16141897
Alignment:
Q  67 aacaagttgtcacaagaaaagttgttcaaataacattgctctt 109  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  16141939 aacaagttgtcataagaaaggttgttcaaataacattgctctt 16141897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 20547983 - 20547905
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataa-tttggttgtccaacaagttgtcaca 80  Q
    |||||||||||||||||||||| |||||| |||| || |||| ||||||| || ||||||||||  | |||||||||||    
T  20547983 ttctctctctattgctttgatttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcaca 20547905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 44856031 - 44856109
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataa-tttggttgtccaacaagttgtcaca 80  Q
    ||||||||||||| |||||||| |||||| |||| || |||| ||||||| || ||||||||||  |||||||||||||    
T  44856031 ttctctctctatttctttgatttttgtgccactacctcatttcctttgtaaaattttggttgtcatacaagttgtcaca 44856109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 5114156 - 5114211
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataattt 58  Q
    |||||||||||||||||||||| |||||  |||| || |||||||||||| |||||    
T  5114156 ttctctctctattgctttgatttttgtgtcactacctcattttctttgtaaaattt 5114211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 41309195 - 41309250
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataattt 58  Q
    |||||||||||||||||||||| |||||  |||| || |||||||||||| |||||    
T  41309195 ttctctctctattgctttgatttttgtgtcactacctcattttctttgtaaaattt 41309250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 27541495 - 27541417
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataa-tttggttgtccaacaagttgtcaca 80  Q
    ||||||||||||||||||| || |||||| |||| || |||| ||||||| || ||||||||||  | |||||||||||    
T  27541495 ttctctctctattgctttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcaca 27541417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 53718140 - 53718185
Alignment:
Q  56 tttggttgtccaacaagttgtcacaagaaaagttgttcaaataaca 101  Q
    |||||||||| || |||||||||| | |||||||||||||||||||    
T  53718140 tttggttgtcaaataagttgtcactaaaaaagttgttcaaataaca 53718185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 33472404 - 33472304
Alignment:
Q  10 tctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattgctct 108  Q
    |||||| |||||||| ||||   ||||||||| | ||||||||||||||| ||||  || ||||||||| || |||  |||||| |||||||||| ||||    
T  33472404 tctattactttgatttttgtatcactatctaaatctctttgtataatttgattgtataagaagttgtcataataaagggttgtttaaataacattactct 33472305  T
Q  109 t 109  Q
    |    
T  33472304 t 33472304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 12007178 - 12007072
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |||||| |||||||||    
T  12007178 ttctctctctattgctttgatttttgtgccactatctaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaatagttgtacaaataaca 12007079  T
Q  102 ttgctct 108  Q
    |||||||    
T  12007078 ttgctct 12007072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 32777699 - 32777594
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataaca 101  Q
    ||||||||| ||| |||||||| |||||| |||| |||| |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||    
T  32777699 ttctctctccattactttgatttttgtgccactacctaaatttctttgtataatttggttgtccaacaagttattacaagaaaagattgttcaaataaca 32777600  T
Q  102 ttgctc 107  Q
    ||||||    
T  32777599 ttgctc 32777594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 29723916 - 29723812
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacat 102  Q
    ||||||||||||||||||||| |||| | ||||||||| |||||||||| |||||||||||||||||||||||||||| |||  ||||| ||||||||||    
T  29723916 tctctctctattgctttgatttttgtaccactatctaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaatggttgtacaaataacat 29723817  T
Q  103 tgctc 107  Q
    |||||    
T  29723816 tgctc 29723812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 2008823 - 2008719
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataacat 102  Q
    ||||||||||||||||||||  |||||| |||| |||| |||||||||||||| ||||||||||||||||||||||| | ||  ||||||||||||||||    
T  2008823 tctctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaatggttgttcaaataacat 2008724  T
Q  103 tgctc 107  Q
    |||||    
T  2008723 tgctc 2008719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 15325632 - 15325524
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||||||||||||| ||| ||| |||||  ||||||||| ||| |||||||||| ||||||||||||||||||||||| | ||| |||||||||||||||    
T  15325632 ttctctctctattgtttttatttttgtgtcactatctaaatttttttgtataatgtggttgtccaacaagttgtcacataaaaaggttgttcaaataaca 15325533  T
Q  102 ttgctcttt 110  Q
    |||||||||    
T  15325532 ttgctcttt 15325524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 33845126 - 33845229
Alignment:
Q  8 tctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataacattgct 106  Q
    ||||| ||||||||||| |||||  |||| |||| |||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  33845126 tctctgttgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaacaaattgtcacatgaaaaggttgttcaaataacattgct 33845225  T
Q  107 cttt 110  Q
    ||||    
T  33845226 cttt 33845229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 27570427 - 27570528
Alignment:
Q  8 tctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattgct 106  Q
    ||||||||||||||||| |||||| |||||| || |||||||||| ||||||||||||||| |||||||||||| ||| |||||| || |||||||||||    
T  27570427 tctctattgctttgatttttgtgccactatcaaaatttctttgtaaaatttggttgtccaataagttgtcacaataaatagttgtacagataacattgct 27570526  T
Q  107 ct 108  Q
    ||    
T  27570527 ct 27570528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 33057458 - 33057567
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataaca 101  Q
    |||||||||||||||||||||| |||||  | || |||| ||||||||||| ||||||||||| || | |||||||||||||||| ||||||||||||||    
T  33057458 ttctctctctattgctttgatttttgtgttattacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaagattgttcaaataaca 33057557  T
Q  102 ttgctcttta 111  Q
    |||| |||||    
T  33057558 ttgcccttta 33057567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 34978375 - 34978483
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    ||||||||||||||||||| || |||||| |||| |||| |||||||||||||||| ||||||||| | ||||||||||||||  |||||| ||||| ||    
T  34978375 ttctctctctattgctttgttttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttaaaatatca 34978474  T
Q  102 ttgctcttt 110  Q
    |||||||||    
T  34978475 ttgctcttt 34978483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 45420053 - 45419947
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||| ||||||| |||||| |||| |||| |||||||||||||||| ||||||||| | ||||||| ||||||  ||||||||||||| |    
T  45420053 ttctctctctattgttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcaaaagaaatggttgttcaaataata 45419954  T
Q  102 ttgctct 108  Q
    |||||||    
T  45419953 ttgctct 45419947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 37352189 - 37352294
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    ||||||||||| || ||||||| |||||  |||| |||| ||| |||||||||||||||||||||||||||||  ||||||||  |||||||||||||||    
T  37352189 ttctctctctactgttttgatttttgtgtcactacctaaatttatttgtataatttggttgtccaacaagttggtacaagaaatggttgttcaaataaca 37352288  T
Q  102 ttgctc 107  Q
    ||||||    
T  37352289 ttgctc 37352294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 21103094 - 21103193
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattg 104  Q
    ||||| ||||||||||||| || ||| ||||||||| ||||||||||||| || ||||||||||||||| ||||||||||  |||||||||||| |||||    
T  21103094 tctctttattgctttgatttttatgccactatctaaatttctttgtataagttagttgtccaacaagttatcacaagaaatggttgttcaaatatcattg 21103193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 28249559 - 28249460
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattg 104  Q
    ||||||| ||||||||||| |||||  ||||  ||| |||||||||||||||| ||||||||| ||||||||||||||||  ||||||||||||||||||    
T  28249559 tctctcttttgctttgatttttgtgtcactacttaaatttctttgtataatttagttgtccaaaaagttgtcacaagaaatggttgttcaaataacattg 28249460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 13152671 - 13152777
Alignment:
Q  3 ttctctctctattgcttt-gattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataac 100  Q
    |||||||||||||||||| |||| |||||| |||| |||| |||||||||||||||| ||||||||| | ||||||| ||||||  |||||||||||| |    
T  13152671 ttctctctctattgcttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcataagaaatggttgttcaaatatc 13152770  T
Q  101 attgctc 107  Q
    |||||||    
T  13152771 attgctc 13152777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 43081882 - 43081774
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||||||||||||||||| ||  |||||  |||| |||| |||||||||||||| |||||||| ||||| |||||||| | ||| |||||||||||||||    
T  43081882 ttctctctctattgctttaatatttgtgtcactacctaaatttctttgtataatgtggttgtctaacaaattgtcacataaaaatgttgttcaaataaca 43081783  T
Q  102 ttgctcttt 110  Q
    ||| |||||    
T  43081782 ttgatcttt 43081774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 26749083 - 26749190
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||| ||||||||||||||||| |||||| |  | |||| | |||||||||||||| ||||||||| |  ||||||||| |||  |||||||||||||||    
T  26749083 ttctttctctattgctttgattgttgtgccataacctaaatctctttgtataatttagttgtccaaaagattgtcacaaaaaatggttgttcaaataaca 26749182  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  26749183 ttgctctt 26749190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 8904415 - 8904348
Alignment:
Q  41 attttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataacattgctc 107  Q
    ||||||||| ||||||||| || ||||||||||| ||||||||||| |||||||||| ||||||||||    
T  8904415 attttctttatataatttgattatccaacaagttatcacaagaaaatgttgttcaaaaaacattgctc 8904348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 3148805 - 3148882
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca 80  Q
    ||||||||||||| |||||||  |||||  ||||||||| ||| ||| |||||| ||||||| |||||||||||||||    
T  3148805 ttctctctctattactttgatatttgtgtcactatctaaatttatttatataatgtggttgttcaacaagttgtcaca 3148882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 43807805 - 43807700
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||| ||||||  ||||||| |||||  ||||  ||| | |||||||||||||||||||| |||||| |||||| ||||||  |||||||||||||||    
T  43807805 ttctctttctattaatttgatttttgtgtcactacttaaatgtctttgtataatttggttgtacaacaaattgtcataagaaagggttgttcaaataaca 43807706  T
Q  102 ttgctc 107  Q
     |||||    
T  43807705 ctgctc 43807700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 46880982 - 46881086
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacat 102  Q
    |||||||||||| |||||||| ||  || ||||||||| | || |||||||||||||||||  || || |||||| || |||  ||||||||||||||||    
T  46880982 tctctctctattactttgattttttcgccactatctaaatgtcgttgtataatttggttgtataaaaaattgtcataataaagggttgttcaaataacat 46881081  T
Q  103 tgctc 107  Q
    |||||    
T  46881082 tgctc 46881086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 38956611 - 38956533
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataa-tttggttgtccaacaagttgtcaca 80  Q
    ||||||||||||||||||| || |||||| |||| || |||| ||||||| || ||||||||||  | |||||||||||    
T  38956611 ttctctctctattgctttgttttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcaca 38956533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 49103541 - 49103479
Alignment:
Q  43 tttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattg 104  Q
    |||||||||||| ||||||||||| |||||||||| || ||||  ||| ||||||||||||||    
T  49103541 tttctttgtatattttggttgtcccacaagttgtctcatgaaatggttattcaaataacattg 49103479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 4292506 - 4292555
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgta 52  Q
    |||||||||||||||||||||| |||| | | ||| ||||||||||||||    
T  4292506 ttctctctctattgctttgatttttgtaccaatatttaattttctttgta 4292555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 43025421 - 43025473
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataattt 58  Q
    |||||||||||||||| || |||||| ||||||| |||| ||||||| |||||    
T  43025421 tctctctattgctttggtttttgtgccactatctcatttcctttgtaaaattt 43025473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 11965872 - 11965980
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||||||||||||||||||||| |||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||| | ||| |||||||||||||||    
T  11965872 ttctctctctattgctttgatttttgtgccactatctaaatttctatgtataatgtggttgtccaacaagttgtcacataaaaaggttgttcaaataaca 11965971  T
Q  102 ttgctcttt 110  Q
    |||||||||    
T  11965972 ttgctcttt 11965980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 36587462 - 36587355
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacat 102  Q
    ||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||| | ||||||| ||||||  ||||||||||||||||    
T  36587462 tctctctctattgctttgatttttgtgccactatctaaatttctttgtataatttagttgtccaaaaggttgtcagaagaaatggttgttcaaataacat 36587363  T
Q  103 tgctcttt 110  Q
    ||||||||    
T  36587362 tgctcttt 36587355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 14871951 - 14872058
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacat 102  Q
    ||||||||||||| ||||||| |||||| |||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||  ||||||||||||||||    
T  14871951 tctctctctattgttttgatttttgtgccactacctaaatttctttgtataatttgattgtctaacaagttgttacaagaaatggttgttcaaataacat 14872050  T
Q  103 tgctcttt 110  Q
    | ||||||    
T  14872051 ttctcttt 14872058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 31578516 - 31578619
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataacattg 104  Q
    ||||||||||||||||||| |||||  |||| |||| ||||||||||||| || |||||||||||||||||||||||||| | ||||||||||| |||||    
T  31578516 tctctctattgctttgatttttgtgtcactacctaaatttctttgtataagttagttgtccaacaagttgtcacaagaaatgattgttcaaatatcattg 31578615  T
Q  105 ctct 108  Q
    ||||    
T  31578616 ctct 31578619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 37316807 - 37316700
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||||||||||||||||||||  |||||  |||| |||| |||||||||||||| ||||||||||||||||||||| | | ||| |||||||||||||||    
T  37316807 ttctctctctattgctttgatatttgtgtcactacctaaatttctttgtataatgtggttgtccaacaagttgtcatagaaaaaggttgttcaaataaca 37316708  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  37316707 ttgctctt 37316700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 37731188 - 37731087
Alignment:
Q  7 ctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataacattgc 105  Q
    |||||||||||||||||  |||||| |||| |||| |||||||||||||| ||||||| ||||||||||||||| | ||| |||||||||||||||||||    
T  37731188 ctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtgcaacaagttgtcacataaaaaggttgttcaaataacattgc 37731089  T
Q  106 tc 107  Q
    ||    
T  37731088 tc 37731087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 8847566 - 8847669
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaag-ttgttcaaataac 100  Q
    |||||||||||||||||||||  || | | ||||||||| ||||||||||||||  |||||||||||||||||||||| ||||||| |||||||||||||    
T  8847566 ttctctctctattgctttgatatttataccactatctaaatttctttgtataatgcggttgtccaacaagttgtcacatagaaaagattgttcaaataac 8847665  T
Q  101 attg 104  Q
    ||||    
T  8847666 attg 8847669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 14877077 - 14877176
Alignment:
Q  12 tattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattgctcttt 110  Q
    ||||| ||||||| |||||| |||| |||| |||||||||  |||||||||||| |||||||||||||||||||  ||||||||||||||||| ||||||    
T  14877077 tattgttttgatttttgtgccactacctaaatttctttgttaaatttggttgtctaacaagttgtcacaagaaatggttgttcaaataacatttctcttt 14877176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 44239118 - 44239220
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattg 104  Q
    ||||||||||||||||||| |||||  |||  |||| |||||||||||||||| ||||||||| || ||||||||| |||  ||||||||||||||||||    
T  44239118 tctctctattgctttgatttttgtgtcactgcctaaatttctttgtataatttagttgtccaaaaaattgtcacaataaatggttgttcaaataacattg 44239217  T
Q  105 ctc 107  Q
    |||    
T  44239218 ctc 44239220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 18510754 - 18510857
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataaca 101  Q
    ||||||||||| | |||||||| |||||  | || |||| ||||||||||| ||||||||||| || | ||||||||||||||| |||||||||||||||    
T  18510754 ttctctctctacttctttgatttttgtgtcattacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttcaaataaca 18510853  T
Q  102 ttgc 105  Q
    ||||    
T  18510854 ttgc 18510857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 30831833 - 30831940
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataaca 101  Q
    ||||||||||||| |||||||| |||||| ||||||||| |  |||||||||||||| ||||  || |||||||||||| ||| | ||||||||||||||    
T  30831833 ttctctctctattactttgatttttgtgccactatctaaatccctttgtataatttgattgtataagaagttgtcacaataaatgattgttcaaataaca 30831932  T
Q  102 ttgctctt 109  Q
    ||| ||||    
T  30831933 ttgatctt 30831940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 2427956 - 2427886
Alignment:
Q  38 ctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattgctc 107  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| |||  |||||||||||||||||||||    
T  2427956 ctaattttctttgtataatttagttgtccaacaaattgtcacaaaaaatggttgttcaaataacattgctc 2427886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 26481082 - 26480976
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||| |||||||| |||||||| |||||  ||||||||| |  |||||||||||||||||||  || |||||||||||| |||  |||||||||||||||    
T  26481082 ttctttctctattactttgatttttgtgtcactatctaaatccctttgtataatttggttgtataagaagttgtcacaataaagggttgttcaaataaca 26480983  T
Q  102 ttgctct 108  Q
    |||||||    
T  26480982 ttgctct 26480976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 39234157 - 39234063
Alignment:
Q  18 tttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataacattgctcttta 111  Q
    ||||||| |||||| || | |||| ||||||||||| ||||||||||| || | ||||||||||||||| |||||||||||| || ||| |||||    
T  39234157 tttgatttttgtgccaccacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttcaaatatcaatgcccttta 39234063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 1079106 - 1079010
Alignment:
Q  12 tattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattgctc 107  Q
    ||||||||||||| |||||  |||   ||| |||||||||||||||| |||||| || | ||||||||||||||  |||||||| ||||||||||||    
T  1079106 tattgctttgatttttgtgtcactgcttaaatttctttgtataatttagttgtctaaaaggttgtcacaagaaatggttgttcatataacattgctc 1079010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 18254202 - 18254124
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataa-tttggttgtccaacaagttgtcaca 80  Q
    ||||||||||||||||||| || |||||| ||||||| |||| ||||||| || ||||||||||  | |||||||||||    
T  18254202 ttctctctctattgctttggtttttgtgccactatctcatttcctttgtaaaattttggttgtcacaaaagttgtcaca 18254124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 7698249 - 7698304
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataattt 58  Q
    |||||| ||||||||||||||| |||||| |||| ||||||| ||||||| |||||    
T  7698249 ttctctttctattgctttgatttttgtgccactacctaatttcctttgtaaaattt 7698304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 32944493 - 32944414
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa 85  Q
    ||||||||||||||||||| |||||  |||| |||| ||| ||| ||||||||  |||||||| | ||| ||||||||||    
T  32944493 tctctctattgctttgatttttgtgtcactacctaaatttttttatataatttaattgtccaaaaggttatcacaagaaa 32944414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 37003689 - 37003766
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca 80  Q
    |||||||| |||| |||||||| || ||| |||||||||    |||||||||||||||||||  || |||||||||||    
T  37003689 ttctctctttattactttgatttttatgccactatctaaacccctttgtataatttggttgtataagaagttgtcaca 37003766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 19916734 - 19916843
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca----agaaaagttgttcaaata 98  Q
    |||||||||||||  ||||||  |||||  |||  |||| |||||||||||||| | ||| |||||||| ||||||||    | ||| ||||||||||||    
T  19916734 ttctctctctattattttgatatttgtgtcactgcctaaatttctttgtataatgtagttatccaacaaattgtcacatagtaaaaaggttgttcaaata 19916833  T
Q  99 acattgctct 108  Q
    | ||||||||    
T  19916834 atattgctct 19916843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 51255825 - 51255932
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||||||||||| |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||| |||  ||||| |||||||||    
T  51255825 ttctctctctattgctttgatttttgtgccactatctaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaatggttgtacaaataaca 51255924  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  51255925 ttgctctt 51255932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 18316016 - 18316124
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||| ||||||||||||||| |||||  |||| |||| |||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  18316016 ttctctttctattgctttgatttttgtgtcactacctaaatttctttgtataatttggttgtccaacaagttgtcataagaaatggttgttcaaataaca 18316115  T
Q  102 ttgctcttt 110  Q
    |||||||||    
T  18316116 ttgctcttt 18316124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 38519872 - 38519980
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||||||||||| |||||| ||||| ||| |||||||||| |||||||||||||||||||||||||||| |||  ||| | |||||||||    
T  38519872 ttctctctctattgctttgatttttgtgccactatttaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaatggttatacaaataaca 38519971  T
Q  102 ttgctcttt 110  Q
    |||||||||    
T  38519972 ttgctcttt 38519980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 5386451 - 5386557
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||||||||||| |||||  ||||||||| |||||||||||||||| |||||| || ||||||||||||||||  |||||||||||| ||    
T  5386451 ttctctctctattgctttgatttttgtgttactatctaaatttctttgtataatttagttgtctaaaaagttgtcacaagaaatggttgttcaaatatca 5386550  T
Q  102 ttgctct 108  Q
    |||||||    
T  5386551 ttgctct 5386557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 26600191 - 26600086
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||| ||||||||||||| |||||||||| ||||||||||| | |||||||||| |||||||||||||| |||||||| | ||| |||||||||||||||    
T  26600191 ttctttctctattgcttttattattgtgccactatctaattctttttgtataatgtggttgtccaacaaattgtcacataaaaatgttgttcaaataaca 26600092  T
Q  102 ttgctc 107  Q
    ||||||    
T  26600091 ttgctc 26600086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 29227235 - 29227128
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||||||||||||||||||||  |||||  |||| |||| |||||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||||    
T  29227235 ttctctctctattgctttgatatttgtgtcactacctaaatttctttgtataatatggttgtccaacaaattgtcacataaaaaggttgttcaaataaca 29227136  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  29227135 ttgctctt 29227128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 41262337 - 41262234
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataaca 101  Q
    |||| ||||||||||||||||| |||||| | ||||||| ||||||||||| ||||||||||| || | ||||||||||||||| |||||||||||||||    
T  41262337 ttctttctctattgctttgatttttgtgccattatctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaaggttgttcaaataaca 41262238  T
Q  102 ttgc 105  Q
    ||||    
T  41262237 ttgc 41262234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 50506470 - 50506572
Alignment:
Q  5 ctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacatt 103  Q
    ||||| |||||||||||||| |||||| |||| |||| |||||||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||    
T  50506470 ctctccctattgctttgatt-ttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatagttgttcaaataacatt 50506568  T
Q  104 gctc 107  Q
    ||||    
T  50506569 gctc 50506572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 52204929 - 52205038
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataaca 101  Q
    |||||||||||||||||||||| |||||  ||||  ||| ||||||| |||||||||||||||||||||||| ||| |||||||| |||||||||||| |    
T  52204929 ttctctctctattgctttgatttttgtgtcactacttaaatttctttttataatttggttgtccaacaagttatcataagaaaagattgttcaaataata 52205028  T
Q  102 ttgctcttta 111  Q
    |||| |||||    
T  52205029 ttgcacttta 52205038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 22813707 - 22813608
Alignment:
Q  10 tctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaag-aaaagttgttcaaataacattgctct 108  Q
    ||||||||||||||| |||||  |||| |||| ||||||| ||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  22813707 tctattgctttgatttttgtgtcactacctaaatttctttatataatttaattgtccaacaagttgtcacaagaaaaagttgtttaaataacattgctct 22813608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 39158184 - 39158291
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||| ||||||| |||| || ||||||  ||| |||| |||||||||||||||||||||||||| |||||||||||| |||  |||||||||||||||    
T  39158184 ttctctttctattgttttggtttttgtgccgctacctaaatttctttgtataatttggttgtccaataagttgtcacaataaatggttgttcaaataaca 39158283  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  39158284 ttgctctt 39158291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 51577693 - 51577800
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||||||||||| |||||| |||| |||| ||||||| |||||||| ||||||||| | ||||||||||||||  ||| |||||||| ||    
T  51577693 ttctctctctattgctttgatttttgtgccactacctaaatttctttatataatttagttgtccaaaaggttgtcacaagaaatggttattcaaatatca 51577792  T
Q  102 ttgctctt 109  Q
     |||||||    
T  51577793 ctgctctt 51577800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 10147080 - 10146975
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataacat 102  Q
    ||||||||| ||||||| ||| |||||  |||| |||| ||||||||||||||||| |||||||||||||| |||||||||| | ||||| |||||||||    
T  10147080 tctctctcttttgcttttatttttgtgtcactacctaaatttctttgtataatttgattgtccaacaagttatcacaagaaatgattgtttaaataacat 10146981  T
Q  103 tgctct 108  Q
    | ||||    
T  10146980 tactct 10146975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 54000777 - 54000878
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||||||  |||  ||||| |||| |||| |||||||||||||||| ||||||||| | |||||||||| ||| ||||||||||||||||    
T  54000777 ttctctctctattgcttaaatttgtgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaataaatagttgttcaaataaca 54000876  T
Q  102 tt 103  Q
    ||    
T  54000877 tt 54000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 14443277 - 14443385
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||||||| ||| ||  || |||| |||| || ||||||||||||| ||||||||| | |||||||||| |||  |||||||||||| ||    
T  14443277 ttctctctctattgctttaatttttacgccactacctaaattcctttgtataatttagttgtccaaaaggttgtcacaaaaaatggttgttcaaatatca 14443376  T
Q  102 ttgctcttt 110  Q
    |||||||||    
T  14443377 ttgctcttt 14443385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 2738260 - 2738161
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataaca 101  Q
    ||||||||||||| |||||||| |||||| || | ||||  |||||||||||||||  |||||||| | |||||||||||||| | ||||| ||||||||    
T  2738260 ttctctctctatttctttgattgttgtgccacaacctaaaattctttgtataatttaattgtccaaaaggttgtcacaagaaatgattgtttaaataaca 2738161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 19651906 - 19651803
Alignment:
Q  8 tctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattgct 106  Q
    |||||||| |||||||| || ||  |||| |||| |||||||||||||||| ||||||||| | |||||||||| |||  |||||||||||| |||| ||    
T  19651906 tctctattactttgatttttatgtcactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaaaaaatggttgttcaaatatcattact 19651807  T
Q  107 cttt 110  Q
    ||||    
T  19651806 cttt 19651803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 50050715 - 50050822
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    ||||||||||| | |||||||| || ||| ||||||||| |  |||||||||| || |||||  || |||||||||||| ||| ||||||||| ||||||    
T  50050715 ttctctctctaatactttgatttttatgccactatctaaatccctttgtataacttagttgtataaaaagttgtcacaataaatagttgttcatataaca 50050814  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  50050815 ttgctctt 50050822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 2004181 - 2004075
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataaca 101  Q
    ||||||||  |||||||||||| ||||   |||| |||| ||||||| ||| ||||| ||||| || | ||| ||||||||||| |||||||||||||||    
T  2004181 ttctctctacattgctttgatttttgtatcactacctaaatttctttatattatttgattgtctaataggttatcacaagaaaaggttgttcaaataaca 2004082  T
Q  102 ttgctct 108  Q
    |||||||    
T  2004081 ttgctct 2004075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 21014106 - 21014180
Alignment:
Q  33 actatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataacattgct 106  Q
    ||||||||| |  |||||||||||||||||||  || |||||||||||| |||| ||||||||||||||||||||    
T  21014106 actatctaaatccctttgtataatttggttgtataagaagttgtcacaataaaaggttgttcaaataacattgct 21014180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 36130342 - 36130268
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca 80  Q
    |||||||||||| |||||| |||||  | || |||| |||||||||||||| || ||||||||||||||||||||    
T  36130342 tctctctattgccttgatttttgtgtcattacctaaatttctttgtataatgtgattgtccaacaagttgtcaca 36130268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 1816665 - 1816560
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataacattg 104  Q
    ||||||||||||||||||| |||||  |||| |||||||| ||| ||||||||  ||||| || |  || |||||||||| | ||||||| |||||||||    
T  1816665 tctctctattgctttgatttttgtgtcactacctaattttttttatataatttaattgtctaaaagattatcacaagaaatgattgttcatataacattg 1816566  T
Q  105 ctcttt 110  Q
    ||||||    
T  1816565 ctcttt 1816560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 149477 - 149409
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaa 71  Q
    ||||||||||||||||||  || |||||  |||| |||| |||||||||||| ||| ||||||||||||    
T  149477 ttctctctctattgctttagtttttgtgtcactacctaaatttctttgtatattttagttgtccaacaa 149409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 38376480 - 38376428
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataattt 58  Q
    |||||||||| |||||||| |||||| ||||||| |||||||||||| |||||    
T  38376480 tctctctattactttgatttttgtgccactatctcattttctttgtaaaattt 38376428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 5932755 - 5932660
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaata 98  Q
    ||||| ||||||| ||||||| |||||  |||| |||| ||||||||||||||||  |||||||| || |||| | ||||||  ||||||||||||    
T  5932755 tctctatctattgttttgatttttgtgtcactacctaaatttctttgtataatttaattgtccaaaaaattgttagaagaaatggttgttcaaata 5932660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 26732303 - 26732381
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataa-tttggttgtccaacaagttgtcaca 80  Q
    |||||||||||||| |||| || |||||| |||| || |||||||||||| || ||||||||||  | |||||||||||    
T  26732303 ttctctctctattgttttggtttttgtgccactacctcattttctttgtaaaattttggttgtcacaaaagttgtcaca 26732381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 42396030 - 42395981
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgta 52  Q
    |||||||||||||||||||||| |||||||| || || ||||| ||||||    
T  42396030 ttctctctctattgctttgatttttgtgcaaatacctcattttttttgta 42395981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 55266104 - 55266209
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataaca 101  Q
    |||||||| |||| |||||||| |||||  ||||||||| |   ||| |||||||| |||||  || ||||| |||||| ||| | ||||||||||||||    
T  55266104 ttctctctttattactttgatttttgtgtcactatctaaatccatttatataatttagttgtataagaagttatcacaataaaggattgttcaaataaca 55266203  T
Q  102 ttgctc 107  Q
    ||||||    
T  55266204 ttgctc 55266209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 5622539 - 5622591
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataattt 58  Q
    |||||||||||||||| || ||||||||||| || |||| ||||||| |||||    
T  5622539 tctctctattgctttggtttttgtgcaactacctcatttcctttgtaaaattt 5622591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 18065082 - 18064974
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||||||||||||||||||||  |||||| |||| |||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||    
T  18065082 ttctctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaaaagttgttcaaataaca 18064983  T
Q  102 ttgctcttt 110  Q
    ||| |||||    
T  18064982 ttgatcttt 18064974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 33712399 - 33712506
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||||||||| ||||||||||  ||||||||||| |||| |||||||||||||| ||||||||||||||||||| ||| | ||| |||||||||||||||    
T  33712399 ttctctctctgttgctttgatatttgtgcaactacctaaatttctttgtataatgtggttgtccaacaagttgttacataaaaaggttgttcaaataaca 33712498  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  33712499 ttgctctt 33712506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 5739756 - 5739648
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||| ||||||||||||||| |||||  |||| |||||||||||| | ||||||| |||||||||||||||||| ||||||  | |||||||||||||    
T  5739756 ttctctttctattgctttgatttttgtgtcactacctaattttctttatttaatttgattgtccaacaagttgtcataagaaatggatgttcaaataaca 5739657  T
Q  102 ttgctcttt 110  Q
    |||||||||    
T  5739656 ttgctcttt 5739648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 14910258 - 14910359
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaagttgttcaaataacattgc 105  Q
    ||||||||||||||||||| |||||  |||| |||| |||||||||||||||| ||||||||| | ||| ||| |||||| |||||||||||||| ||||    
T  14910258 tctctctattgctttgatttttgtgtcactacctaaatttctttgtataatttagttgtccaaaaggttctcaaaagaaatgttgttcaaataacgttgc 14910357  T
Q  106 tc 107  Q
    ||    
T  14910358 tc 14910359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 8505763 - 8505659
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataattt-ggttgtccaacaagttgtcacaagaaaag-ttgttcaaataacatt 103  Q
    ||||||||||||||||||| |||| |||||| |||| ||||||||||||||||  ||||||||| || ||||||||||||| | ||||||||||| ||||    
T  8505763 tctctctattgctttgatttttgtacaactacctaaatttctttgtataatttaagttgtccaaaaaattgtcacaagaaatgattgttcaaatatcatt 8505664  T
Q  104 gctct 108  Q
    |||||    
T  8505663 gctct 8505659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 8645387 - 8645492
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    ||||||||||||||||||||||  || |  |||| |||| |||||||||||||||| ||||||||| | ||||||||||||||  |||||||||||| ||    
T  8645387 ttctctctctattgctttgatttatgcgtcactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttcaaatatca 8645486  T
Q  102 ttgctc 107  Q
    ||||||    
T  8645487 ttgctc 8645492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 11635527 - 11635418
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    ||||||||||||| |||||||| |||||| ||||||||| | ||||||||||||||||||||  || || ||||||||| |||  ||||||||||||| |    
T  11635527 ttctctctctattactttgatttttgtgccactatctaaatctctttgtataatttggttgtataagaaattgtcacaataaagggttgttcaaataaga 11635428  T
Q  102 ttgctcttta 111  Q
     |||||||||    
T  11635427 ctgctcttta 11635418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 1286993 - 1287101
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataacat 102  Q
    |||||||| ||| |||||||| |||||  ||||||||| ||  |||||||||||| |||||  || |||||||||||| ||| | |||||||||||||||    
T  1286993 tctctctcgattactttgatttttgtgtcactatctaaattcttttgtataatttagttgtataagaagttgtcacaataaaggattgttcaaataacat 1287092  T
Q  103 tgctcttta 111  Q
    |||||||||    
T  1287093 tgctcttta 1287101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 17182180 - 17182282
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattg 104  Q
    |||||||||| |||||||| || ||| ||||||||| |  |||||||||||||| ||||  || ||||||||| || |||  ||||||||||||||||||    
T  17182180 tctctctattactttgatttttatgccactatctaaatccctttgtataatttgattgtataagaagttgtcataataaagggttgttcaaataacattg 17182279  T
Q  105 ctc 107  Q
    |||    
T  17182280 ctc 17182282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 3772441 - 3772497
Alignment:
Q  10 tctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtcc 66  Q
    ||||||| ||||||| |||||  ||||||||| |||||||||||| |||||||||||    
T  3772441 tctattgatttgatttttgtgtcactatctaaatttctttgtatattttggttgtcc 3772497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 552871 - 552949
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataa-tttggttgtccaacaagttgtcaca 80  Q
    ||||||||||||||||||| || |||||| |||| || |||| ||||||| || ||||||||||  | |||||||||||    
T  552871 ttctctctctattgctttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcaca 552949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 3853300 - 3853251
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgta 52  Q
    |||||||||||||||||||||| |||||  | ||||| ||||||||||||    
T  3853300 ttctctctctattgctttgatttttgtgtcaatatctcattttctttgta 3853251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 8990986 - 8991087
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataaca 101  Q
    |||||| ||||||| ||||||| |||||| ||||  | | |||||||||| | ||| ||||||||| | | |||| ||||||| | ||||||||||||||    
T  8990986 ttctctttctattgttttgatttttgtgccactactttaatttctttgtaaattttagttgtccaagaggctgtctcaagaaagggttgttcaaataaca 8991085  T
Q  102 tt 103  Q
    ||    
T  8991086 tt 8991087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 9015433 - 9015534
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataaca 101  Q
    |||||| ||||||| ||||||| |||||| ||||  | | |||||||||| | ||| ||||||||| | | |||| ||||||| | ||||||||||||||    
T  9015433 ttctctttctattgttttgatttttgtgccactactttaatttctttgtaaattttagttgtccaagaggctgtctcaagaaagggttgttcaaataaca 9015532  T
Q  102 tt 103  Q
    ||    
T  9015533 tt 9015534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 12588367 - 12588265
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtc---acaagaaaagttgttcaaataac 100  Q
    ||||||||||||||||||||| |||||| ||||  ||  |||||||||| | |||  |||||||| || || ||   | || ||||||||||||||||||    
T  12588367 tctctctctattgctttgatttttgtgccactacatatatttctttgtaaattttaattgtccaaaaaattatcccaaaaaaaaaagttgttcaaataac 12588268  T
Q  101 att 103  Q
    |||    
T  12588267 att 12588265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 33451556 - 33451451
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||||||||||||||||| |||||| |||| ||||||| |||||||||||||| ||||| |||||||||||||||||||  |||||||||||||||    
T  33451556 ttctctctctattgctttgatttttgtgccactacctaattt-ctttgtataatttgattgtctaacaagttgtcacaagaaagggttgttcaaataaca 33451458  T
Q  102 ttgctct 108  Q
    |||||||    
T  33451457 ttgctct 33451451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 44090965 - 44091070
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataaca 101  Q
    |||||||||||||||||||||| |||||  |||| |||| |||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||    
T  44090965 ttctctctctattgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaaaaagttgtcacatgaaaaggttgttcaaataaca 44091064  T
Q  102 ttgctc 107  Q
    ||||||    
T  44091065 ttgctc 44091070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 15716968 - 15716860
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||||||||||||||||||||  ||||   |||| |||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||    
T  15716968 ttctctctctattgctttgatatttgtatcactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaaaagttgttcaaataaca 15716869  T
Q  102 ttgctcttt 110  Q
    |||||||||    
T  15716868 ttgctcttt 15716860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 26026975 - 26027082
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||| ||||||||||| ||| ||||   ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||    
T  26026975 ttctctttctattgctttaatttttgtatcactatctaaatttctttgtataatttggttggccaacaagttgtcacaagaaatagctgttcaaataaca 26027074  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  26027075 ttgctctt 26027082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 33107859 - 33107752
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||||||||| ||||||||||  ||||||||||| |||| |||||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||||    
T  33107859 ttctctctctgttgctttgatatttgtgcaactacctaaatttctttgtataatgtggttgtccaacaaattgtcacataaaaaggttgttcaaataaca 33107760  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  33107759 ttgctctt 33107752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 44061796 - 44061902
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||| ||| ||||||||||| |||||  ||||||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||    
T  44061796 ttctctttctgttgctttgatttttgtgtcactatctaaatttctttgtataatttggttgtccaacaaattatcacaagaaatagttgttcaaataaca 44061895  T
Q  102 ttgctct 108  Q
    || ||||    
T  44061896 ttactct 44061902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 12241154 - 12241258
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataacattg 104  Q
    ||||||||||||||||||| || ||  ||||||||| |||||||||||||| |||||||||||||| || ||||| | ||||||||||||||||||||||    
T  12241154 tctctctattgctttgatttttatgtcactatctaaatttctttgtataatgtggttgtccaacaaattatcacataaaaaagttgttcaaataacattg 12241253  T
Q  105 ctctt 109  Q
    |||||    
T  12241254 ctctt 12241258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 9629649 - 9629744
Alignment:
Q  10 tctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaag-aaaagttgttcaaataacattg 104  Q
    ||||||| ||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  9629649 tctattgttttgatttttgtgcaattatccaaatttctttgtataatttggttgtccaacaagttgtcatgagaaaaagttgttcaaataacattg 9629744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 1068685 - 1068791
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||||||||||||||||||||  ||||   |||| |||| |||||||||||||| ||||||||||||||||||||||| | ||| |||||||||||||||    
T  1068685 ttctctctctattgctttgatatttgtaacactacctaaatttctttgtataatgtggttgtccaacaagttgtcacataaaaaggttgttcaaataaca 1068784  T
Q  102 ttgctct 108  Q
    |||||||    
T  1068785 ttgctct 1068791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 34435725 - 34435624
Alignment:
Q  7 ctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataacattgc 105  Q
    |||||||||||||||||  |||||| |||| |||| |||||||||||||| ||||||| ||||||||||||||| | ||| |||||||||||||||||||    
T  34435725 ctctctattgctttgatatttgtgccactacctaaatttctttgtataatgtggttgtgcaacaagttgtcacataaaaaggttgttcaaataacattgc 34435626  T
Q  106 tc 107  Q
    ||    
T  34435625 tc 34435624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 28772117 - 28772011
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacat 102  Q
    ||||||| ||||| ||||||| |||||| |||| |||| |||||||||||||||| ||||||||| | ||||||||||||||  |||||||||||| |||    
T  28772117 tctctctttattgttttgatttttgtgccactacctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttcaaatatcat 28772018  T
Q  103 tgctctt 109  Q
    |||||||    
T  28772017 tgctctt 28772011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 25987776 - 25987671
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattg 104  Q
    ||||||||||||||||||| |||||  |||| |||| |||||||||||||||| ||||| ||| | ||||||||||||||  |||||||||||||||||     
T  25987776 tctctctattgctttgatttttgtgtcactacctaaatttctttgtataatttagttgttcaaaaggttgtcacaagaaatggttgttcaaataacatta 25987677  T
Q  105 ctcttt 110  Q
    ||||||    
T  25987676 ctcttt 25987671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 37172139 - 37172244
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaag-aaaagttgttcaaataaca 101  Q
    |||||| || ||| |||||||| |||||  | || |||| ||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||    
T  37172139 ttctctttccattactttgatttttgtgtcattacctaaatttctttgtataatttggttgtccaacaaattgttacaagaaaaaattgttcaaataaca 37172238  T
Q  102 ttgctc 107  Q
    ||||||    
T  37172239 ttgctc 37172244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 44825521 - 44825604
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa 86  Q
    |||||||||||||||||||||| ||||  |  ||||||| ||||||||||||||||| ||||| | ||||||||||||||||||    
T  44825521 ttctctctctattgctttgatttttgtatatttatctaaatttctttgtataatttgattgtcaatcaagttgtcacaagaaaa 44825604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 2730953 - 2730849
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    ||||||||| | |||||||||| |||||| ||||||||| ||| |||||||||||| ||| | ||| | ||||||||||||||  |||||||||||| ||    
T  2730953 ttctctctcaactgctttgatttttgtgccactatctaaatttatttgtataatttagttattcaaaaggttgtcacaagaaattgttgttcaaatatca 2730854  T
Q  102 ttgct 106  Q
    |||||    
T  2730853 ttgct 2730849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 5600979 - 5600903
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcac 79  Q
    |||||||| ||||||||||||| |||||  || |||||| |||||||||| ||||||||||||||||||||| ||||    
T  5600979 ttctctctttattgctttgatttttgtgtcaccatctaaatttctttgtaaaatttggttgtccaacaagttatcac 5600903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 5639641 - 5639717
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcac 79  Q
    |||||||| ||||||||||||| |||||  || |||||| |||||||||| ||||||||||||||||||||| ||||    
T  5639641 ttctctctttattgctttgatttttgtgtcaccatctaaatttctttgtaaaatttggttgtccaacaagttatcac 5639717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 45405976 - 45405894
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa 85  Q
    |||||||||||||| ||||||| |||||  | ||| ||| ||| |||||||||||||||||||||||||||| ||| ||||||    
T  45405976 ttctctctctattgttttgatttttgtgttattatataaatttatttgtataatttggttgtccaacaagttctcataagaaa 45405894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 9630202 - 9630307
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||| |||||||| |||||||| || |   |||| |||| ||||||| |||||||| |||||| ||||| ||||||||| ||| ||||||| ||||||||    
T  9630202 ttctttctctatttctttgatttttatatcactacctaaatttctttatataatttagttgtctaacaaattgtcacaaaaaatagttgtttaaataaca 9630301  T
Q  102 ttgctc 107  Q
    ||||||    
T  9630302 ttgctc 9630307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 17775416 - 17775312
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    ||||||||||| ||||||| || |||||  |  |||||  |||||||||||| ||| ||||||| ||||||||| ||| | || ||||||||||||||||    
T  17775416 ttctctctctagtgctttggtttttgtgtcaagatctatatttctttgtatattttagttgtcctacaagttgttacataaaatagttgttcaaataaca 17775317  T
Q  102 ttgct 106  Q
    |||||    
T  17775316 ttgct 17775312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 22719518 - 22719573
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataattt 58  Q
    ||||||||||||||||||| || ||||||||||| || |||||||||||| |||||    
T  22719518 ttctctctctattgctttggtttttgtgcaactacctcattttctttgtaaaattt 22719573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 11134713 - 11134767
Alignment:
Q  54 aatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattgctc 107  Q
    |||||| |||||||||||||| |||||||||| | ||||||||||||||||||||    
T  11134713 aatttgtttgtccaacaagttatcacaagaaatatttgttcaaataacattgctc 11134767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 42652675 - 42652777
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattg 104  Q
    |||||||||| |||| ||| | |||| ||||||||| |   ||| |||||||| |||||  || |||||||||||| ||| |||||||||||||||||||    
T  42652675 tctctctattactttaattttcgtgccactatctaaatccatttatataatttagttgtataaaaagttgtcacaataaagagttgttcaaataacattg 42652774  T
Q  105 ctc 107  Q
    |||    
T  42652775 ctc 42652777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 36874102 - 36873996
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattg 104  Q
    ||||||||||  ||||||| |||| | ||||||||| |  |||| ||||||||||||||  || || || |||||| |||  ||||||||||||||||||    
T  36874102 tctctctattattttgatttttgtaccactatctaaatccctttatataatttggttgtataaaaaattatcacaataaagggttgttcaaataacattg 36874003  T
Q  105 ctcttta 111  Q
    || ||||    
T  36874002 ctattta 36873996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 4672105 - 4672166
Alignment:
Q  38 ctaattttctttgtataatttggttgtccaacaagttgtcacaag-aaaagttgttcaaata 98  Q
    |||| ||||||||||| ||||||||||| || | | ||||||||| ||||||||||||||||    
T  4672105 ctaaatttctttgtattatttggttgtctaatagggtgtcacaagaaaaagttgttcaaata 4672166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 27854758 - 27854706
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataattt 58  Q
    ||||||||||| ||||||| |||||| | ||| |||||||||||||| |||||    
T  27854758 tctctctattgttttgatttttgtgccaatatttaattttctttgtaaaattt 27854706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 29025338 - 29025414
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataa-tttggttgtccaacaagttgtca 78  Q
    ||||||||||||||||||| || |||||  | || || |||||||||||| || ||||||||||| | |||||||||    
T  29025338 ttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaattttggttgtcccaaaagttgtca 29025414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 39856116 - 39856164
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgt 51  Q
    |||||||||||||||||||||| |||||  | |||||| ||||||||||    
T  39856116 ttctctctctattgctttgatttttgtgtcaatatctatttttctttgt 39856164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 8945 - 8840
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataaca 101  Q
    |||||||||||||||||||||| |||||  |||| |||| |||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||    
T  8945 ttctctctctattgctttgatttttgtgtcactacctaaatttctttgtataatgtggttgtccaaaaagttgtcacatgaaaaggttgttcaaataaca 8846  T
Q  102 ttgctc 107  Q
    ||||||    
T  8845 ttgctc 8840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 47642599 - 47642492
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||| ||||||||||| ||| |||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||  |||||||||||||||    
T  47642599 ttctctttctattgctttaatttttgtgtcactatctaaatttctttgtataatttggttgtccaacaagttgtcccaaaaaatggttgttcaaataaca 47642500  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  47642499 ttgctctt 47642492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 103
Target Start/End: Complemental strand, 7919051 - 7918953
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacatt 103  Q
    |||||||||| |||||||| |||||| |||| |||| ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||    
T  7919051 tctctctattactttgatttttgtgccactacctaaatttctttgtataatttggttgtctaacaagttgtcacaagaaagggttgttcaaataacatt 7918953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 48983660 - 48983552
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||| ||||||||||||||| |||||| | ||||||| |||||||||| |||||||||||||||||||||||||||| |||  ||||| | |||||||    
T  48983660 ttctctttctattgctttgatttttgtgccattatctaaatttctttgtaaaatttggttgtccaacaagttgtcacaataaatggttgtaccaataaca 48983561  T
Q  102 ttgctcttt 110  Q
    |||||||||    
T  48983560 ttgctcttt 48983552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 40439832 - 40439725
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||||||||||||||||||||  |||||  |||| |||| |||||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||||    
T  40439832 ttctctctctattgctttgatatttgtgacactacctaaatttctttgtataatgtggttgtccaacaaattgtcacataaaaaggttgttcaaataaca 40439733  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  40439732 ttgctctt 40439725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 48858904 - 48859007
Alignment:
Q  5 ctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacatt 103  Q
    |||||||||||||||||||| |||||  ||||||||| |||||||||||||||| ||||||||| | ||||||||||||||  |||||||| ||||||||    
T  48858904 ctctctctattgctttgatttttgtgtcactatctaaatttctttgtataatttagttgtccaaaaggttgtcacaagaaatggttgttcatataacatt 48859003  T
Q  104 gctc 107  Q
    ||||    
T  48859004 gctc 48859007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 5771735 - 5771631
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataacat 102  Q
    ||||| ||||||||||||||| || ||| |||| |||| |||||||||||||||| |||||| || | |||||||||||||| | |||||||||||||||    
T  5771735 tctctatctattgctttgatttttctgccactacctaaatttctttgtataatttagttgtctaaaaggttgtcacaagaaatgattgttcaaataacat 5771636  T
Q  103 tgctc 107  Q
    |||||    
T  5771635 tgctc 5771631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 38878886 - 38878788
Alignment:
Q  10 tctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataacattgctc 107  Q
    ||||||||||||||| |||||  |||| |||| ||||||| |||||| | ||||||||||||||||||||| | ||| |||||||||||||||||||||    
T  38878886 tctattgctttgatttttgtgtcactacctaaatttctttatataatatagttgtccaacaagttgtcacataaaaatgttgttcaaataacattgctc 38878788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 4213151 - 4213258
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    ||||||||||||| |||||||| |||||  ||||||||| | | ||| ||||||||||||||  || |||||||||||| |||  |||||||||||||||    
T  4213151 ttctctctctattactttgatttttgtgtcactatctaaatctttttatataatttggttgtataagaagttgtcacaataaagggttgttcaaataaca 4213250  T
Q  102 ttgctctt 109  Q
    ||||||||    
T  4213251 ttgctctt 4213258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 17082735 - 17082664
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagtt 74  Q
    ||||||||||||| |||||||  |||||| |||| |||| |||||||||||||| |||||||||||||||||    
T  17082735 ttctctctctattactttgatatttgtgccactacctaaatttctttgtataatatggttgtccaacaagtt 17082664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 42468674 - 42468777
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattg 104  Q
    ||||| ||||| ||| ||| |||||  |||| |||| ||||||||||||| || |||||||||||| |||||||||||||  |||||||||||| |||||    
T  42468674 tctctttattgttttaatttttgtgtcactacctaaatttctttgtataagttagttgtccaacaaattgtcacaagaaatggttgttcaaatatcattg 42468773  T
Q  105 ctct 108  Q
    ||||    
T  42468774 ctct 42468777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 4857989 - 4858087
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataac 100  Q
    |||||||||||||||||||||  |||||| ||||  ||| |||||||||||||| ||||||||||| || || ||||| | ||| ||||||||||||||    
T  4857989 ttctctctctattgctttgatatttgtgccactacttaaatttctttgtataatgtggttgtccaataaattatcacataaaaaggttgttcaaataac 4858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 23332352 - 23332443
Alignment:
Q  7 ctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaat 97  Q
    |||||||||||||||||  |||||  |||| |||| |||||||||||||| |||||||||||||| || ||||| | ||| |||||||||||    
T  23332352 ctctctattgctttgatatttgtgttactacctaaatttctttgtataatgtggttgtccaacaaattatcacataaaaaggttgttcaaat 23332443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 19442590 - 19442694
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    ||||||||||||||||||| || |||||| |  | |||  | |||||||||| ||| ||||||||| ||||||| ||| | || ||||||||||||||||    
T  19442590 ttctctctctattgctttggtttttgtgccaagacctatatatctttgtatattttagttgtccaataagttgttacataaaatagttgttcaaataaca 19442689  T
Q  102 ttgct 106  Q
    |||||    
T  19442690 ttgct 19442694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 27742697 - 27742794
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataacattg 104  Q
    ||||||||||||||||||| |||| |      |||| |||||||||||| | | ||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  27742697 tctctctattgctttgatttttgtac------ctaaatttctttgtatagtgttgttgtccaacaagttgttacataaaaaggttgttcaaataacattg 27742790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 47990282 - 47990222
Alignment:
Q  43 tttctttgtataatttggttgtccaacaagttgtc--acaagaaaagttgttcaaataaca 101  Q
    |||||||||||| ||||||||||| ||||||||||  |||| || ||||||||||||||||    
T  47990282 tttctttgtatattttggttgtcccacaagttgtcaaacaaaaatagttgttcaaataaca 47990222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 31088259 - 31088337
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataa-tttggttgtccaacaagttgtcaca 80  Q
    ||||||||||||||||||| || |||||| |||| || ||||| |||||| || ||||||||||  | |||||||||||    
T  31088259 ttctctctctattgctttggtttttgtgccactacctcattttttttgtaaaattttggttgtcacaaaagttgtcaca 31088337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 17097794 - 17097688
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaagttgttcaaataacat 102  Q
    |||||| |||||| |||||||| |||||  |||| ||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||    
T  17097794 ttctctttctattactttgatttttgtgtcactacctaattttctttgtataatttagttgtccaacaaattgtcacaagaaatggtgttcaaataacat 17097695  T
Q  103 tgctctt 109  Q
    | |||||    
T  17097694 tactctt 17097688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 12739851 - 12739951
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaagttgttcaaataacat 102  Q
    |||||||||||||||||||||| ||||||  ||| |||| ||||||||||||||||||||||||||||| || ||| || |||  |||||||||||||||    
T  12739851 ttctctctctattgctttgatttttgtgcttctacctaaatttctttgtataatttggttgtccaacaaattatcataaaaaatattgttcaaataacat 12739950  T
Q  103 t 103  Q
    |    
T  12739951 t 12739951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 12802674 - 12802774
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaagttgttcaaataacat 102  Q
    |||||||||||||||||||||| ||||||  ||| |||| ||||||||||||||||||||||||||||| || ||| || |||  |||||||||||||||    
T  12802674 ttctctctctattgctttgatttttgtgcttctacctaaatttctttgtataatttggttgtccaacaaattatcataaaaaatattgttcaaataacat 12802773  T
Q  103 t 103  Q
    |    
T  12802774 t 12802774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 42446280 - 42446180
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataacattg 104  Q
    ||||||||||||||||||| |||||| | || |||| ||||||||||| ||||||||||| || | ||||||||||||||| ||||||||||||||||||    
T  42446280 tctctctattgctttgatttttgtgccattacctaaatttctttgtattatttggttgtctaataggttgtcacaagaaaatgttgttcaaataacattg 42446181  T
Q  105 c 105  Q
    |    
T  42446180 c 42446180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 39195824 - 39195927
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataacat 102  Q
    ||||||||||||||||||||| ||||   |||| |||| |||||||||||||| |||||||||||||| |||||||| | |||| |||||||||||||||    
T  39195824 tctctctctattgctttgatttttgtatcactacctaaatttctttgtataatgtggttgtccaacaaattgtcacataaaaaaattgttcaaataacat 39195923  T
Q  103 tgct 106  Q
    ||||    
T  39195924 tgct 39195927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 31748415 - 31748520
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataaca 101  Q
    |||||| ||||||||||||||| |||||| || | |||| ||||||||||||||||| |||||||| |||||||||||| ||| | ||||||||||||||    
T  31748415 ttctctatctattgctttgatttttgtgctacaacctaaatttctttgtataatttgattgtccaataagttgtcacaaaaaatgattgttcaaataaca 31748514  T
Q  102 ttgctc 107  Q
    | ||||    
T  31748515 tcgctc 31748520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 21210897 - 21211001
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    |||||||||||||||||| ||| |||| | |||| |||| |||||||||||||| ||||||| ||| ||||||||||| | ||| |||||||||||||||    
T  21210897 ttctctctctattgctttaatttttgtactactacctaaatttctttgtataatgtggttgttcaataagttgtcacataaaaaggttgttcaaataaca 21210996  T
Q  102 ttgct 106  Q
    |||||    
T  21210997 ttgct 21211001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 32872883 - 32872784
Alignment:
Q  10 tctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattgctct 108  Q
    ||||||||||||| | |||||  |||| |||| ||||||| |||| |||| |||||||||||||||||||||||||  ||||||||||||||||||||||    
T  32872883 tctattgctttgacttttgtgttactacctaaatttctttttatattttgattgtccaacaagttgtcacaagaaagggttgttcaaataacattgctct 32872784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 19981978 - 19981876
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataaca 101  Q
    |||||| |||||| |||||||| |||||| ||||||||| ||| ||||||||||||  ||||||||||| |||||| ||||||| |||||| ||||||||    
T  19981978 ttctctttctattactttgatttttgtgccactatctaaatttttttgtataatttaattgtccaacaaattgtcataagaaaatgttgtttaaataaca 19981879  T
Q  102 ttg 104  Q
    |||    
T  19981878 ttg 19981876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 13089771 - 13089672
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattg 104  Q
    ||||||||||||||||||| |||||  |||| |||| ||||||||||||||||  |||| ||| | ||||||| ||||||  ||||||||||||||||||    
T  13089771 tctctctattgctttgatttttgtgtcactacctaaatttctttgtataatttaattgttcaaaaggttgtcataagaaatggttgttcaaataacattg 13089672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 11954510 - 11954616
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||| |||||||| |||||||| |||||| ||||||||| |  ||||||||||||| |||||  || ||||||||| || |||  |||||||||||||||    
T  11954510 ttctttctctattactttgatttttgtgccactatctaagtcactttgtataatttagttgtataagaagttgtcaaaataaatggttgttcaaataaca 11954609  T
Q  102 ttgctct 108  Q
    |||||||    
T  11954610 ttgctct 11954616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 611943 - 612025
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa 85  Q
    ||||||||||| |||||||||| |||||  |||| |||| |||||||||||||||| |||||| || | |||||||| |||||    
T  611943 ttctctctctactgctttgatttttgtgtcactacctaaatttctttgtataatttagttgtctaaaaggttgtcacgagaaa 612025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 16972092 - 16971987
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaag-ttgttcaaataaca 101  Q
    ||||||||||||| |||||||| |||||  | | ||||| |  |||||||||||||| ||||  || |||||||||||| ||| | ||||||||||||||    
T  16972092 ttctctctctattactttgatttttgtgtcagtctctaaatccctttgtataatttgattgtataagaagttgtcacaataaatgattgttcaaataaca 16971993  T
Q  102 ttgctc 107  Q
    ||||||    
T  16971992 ttgctc 16971987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 36563045 - 36562944
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    ||||||||||||||||| | || |||||  | || || | ||||||||| || |||||||||||||||||||||| ||| |||  |||||||||||||||    
T  36563045 ttctctctctattgcttaggtttttgtgtcaataccttaatttctttgtgtagtttggttgtccaacaagttgtcccaacaaagggttgttcaaataaca 36562946  T
Q  102 tt 103  Q
    ||    
T  36562945 tt 36562944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 5168261 - 5168316
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataattt 58  Q
    |||||||||||||||||||||| |||||| |||| || |||||||||||| |||||    
T  5168261 ttctctctctattgctttgatttttgtgccactacctcattttctttgtaaaattt 5168316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 27487965 - 27488020
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataattt 58  Q
    ||||||||||||||||||| || |||||| | ||| |||||||||||||| |||||    
T  27487965 ttctctctctattgctttggtttttgtgccaatatttaattttctttgtaaaattt 27488020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 39054665 - 39054712
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttg 50  Q
    |||||||||||||||||||||| |||||||| ||| | ||||||||||    
T  39054665 ttctctctctattgctttgatttttgtgcaaatatatcattttctttg 39054712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 26791237 - 26791159
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataa-tttggttgtccaacaagttgtcaca 80  Q
    ||||||||||||||||||| || |||||| |||| || |||| ||||||| || ||||||||||  | |||||||||||    
T  26791237 ttctctctctattgctttggtttttgtgccactaactcatttcctttgtaaaattttggttgtcacaaaagttgtcaca 26791159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 28306125 - 28306047
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataa-tttggttgtccaacaagttgtcaca 80  Q
    ||||||||||||||||||| |  |||||| |||| || |||||||||||| || ||||||||||  | |||||||||||    
T  28306125 ttctctctctattgctttggtctttgtgccactacctcattttctttgtaaaattttggttgtcacaaaagttgtcaca 28306047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 35075567 - 35075474
Alignment:
Q  6 tctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaata 98  Q
    ||||||||||||||||||| |||| | | ||||||| ||| ||||||||   |||||||| || |||||||| ||| |||  ||||||||||||    
T  35075567 tctctctattgctttgatttttgtaccaatatctaaatttgtttgtatatgatggttgtctaagaagttgtcccaataaagggttgttcaaata 35075474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 32284783 - 32284708
Alignment:
Q  33 actatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataacattgctct 108  Q
    |||| |||| |||||||| ||| ||| |||||||||||||||||| ||| |||| |||||| |||||||||| ||||    
T  32284783 actacctaaatttctttggata-tttagttgtccaacaagttgtctcaacaaaaggttgtttaaataacatttctct 32284708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 1723 - 1828
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||| | |||||| |||||||  |||||||| ||||||    
T  1723 ttctctctttattgctttgatttttgtgccactatctaaatttctttgtataatttagttgtccaaaaggttgtcgcaagaaatggttgttcacataaca 1822  T
Q  102 ttgctc 107  Q
    ||||||    
T  1823 ttgctc 1828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 8551 - 8656
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataaca 101  Q
    |||||| ||||||||||||||| |||||  || | |||| ||||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  8551 ttctctttctattgctttgatttttgtgtcaccaactaaatttctttatataatttagttgtctaacaagttgtcacaagaaatagttgttcaaataaca 8650  T
Q  102 ttgctc 107  Q
    ||||||    
T  8651 ttgctc 8656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 101891 - 101790
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacat 102  Q
    ||||||||||||||||||||| || ||  |||| |||| |||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||||||    
T  101891 tctctctctattgctttgatttttatgtcactacctaaatttctttgtataatttggttgt-caacaagttgtcacaagaaagggttgtgcaaataacat 101793  T
Q  103 tgc 105  Q
    |||    
T  101792 tgc 101790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 11014 - 11119
Alignment:
Q  4 tctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacat 102  Q
    ||||||||||||||||||||| |||||| |||| |||| |||||||||||||||| |||||| || | ||| ||| ||||||  ||||||||||||||||    
T  11014 tctctctctattgctttgatttttgtgccactaactaaatttctttgtataatttagttgtcgaaaaggttttcaaaagaaagggttgttcaaataacat 11113  T
Q  103 tgctct 108  Q
    ||||||    
T  11114 tgctct 11119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 6512 - 6404
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcacaagaaaa-gttgttcaaataaca 101  Q
    ||||||||||||| |||||||| |||||  ||||||||| |  ||||||||| |||||||||  || ||||||| |||| |||| |||||||||||| ||    
T  6512 ttctctctctattactttgatttttgtgtcactatctaaatccctttgtatagtttggttgtataagaagttgtaacaataaaaggttgttcaaatagca 6413  T
Q  102 ttgctcttt 110  Q
    |||||||||    
T  6412 ttgctcttt 6404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 13514 - 13444
Alignment:
Q  38 ctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattgctc 107  Q
    |||| |||||||||||||||| ||||||||| |||||||||||| ||| ||||||| ||||||||||||||    
T  13514 ctaaatttctttgtataatttagttgtccaataagttgtcacaaaaaagagttgtttaaataacattgctc 13444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 59330 - 59400
Alignment:
Q  38 ctaattttctttgtataatttggttgtccaacaagttgtcacaagaaa-agttgttcaaataacattgctc 107  Q
    |||| |||||||||||||||| ||||||||| |||||||||||| ||| ||||||| ||||||||||||||    
T  59330 ctaaatttctttgtataatttagttgtccaataagttgtcacaaaaaagagttgtttaaataacattgctc 59400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 28319 - 28217
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataatttggttgtccaacaagttgtcaca-agaaaagttgttcaaataaca 101  Q
    ||||||||||||| |||||||| || ||| ||||| ||| ||||| | |||||  |||||||| |||||||||||| | | |||||||||||||||| ||    
T  28319 ttctctctctattactttgatttttatgccactatataaatttctatatataacgtggttgtctaacaagttgtcagataaaaaagttgttcaaatatca 28220  T
Q  102 ttg 104  Q
    |||    
T  28219 ttg 28217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 76612 - 76534
Alignment:
Q  3 ttctctctctattgctttgattattgtgcaactatctaattttctttgtataa-tttggttgtccaacaagttgtcaca 80  Q
    ||||||||||||||||||| || |||||| |||| || |||| ||||||| || ||||||||||  | |||||||||||    
T  76612 ttctctctctattgctttggtttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcaca 76534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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