View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11405_low_25 (Length: 255)

Name: NF11405_low_25
Description: NF11405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11405_low_25
NF11405_low_25
[»] chr5 (4 HSPs)
chr5 (150-241)||(4175836-4175927)
chr5 (65-153)||(14591840-14591928)
chr5 (60-153)||(30917461-30917554)
chr5 (65-153)||(19828629-19828717)
[»] chr4 (3 HSPs)
chr4 (23-138)||(25871128-25871243)
chr4 (5-138)||(16748843-16748975)
chr4 (23-153)||(25506234-25506368)
[»] chr6 (1 HSPs)
chr6 (23-153)||(31121131-31121265)
[»] chr3 (2 HSPs)
chr3 (65-153)||(40396829-40396917)
chr3 (78-137)||(50232689-50232747)
[»] chr1 (1 HSPs)
chr1 (65-138)||(50052797-50052870)
[»] chr2 (1 HSPs)
chr2 (57-137)||(13007964-13008044)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 4175836 - 4175927
Alignment:
Q  150 aattcctaagcaatgtagtgttttttggtgtaccggagcaaaaaccaataatgataaatgataaatatctaagataagagaccatcctatgc 241  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175836 aattcctaagcaatgtagagttttttggtgtaccgtagcaaaaaccaataatgataaatgataaatatctaagataagagaccatcctatgc 4175927  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 14591928 - 14591840
Alignment:
Q  65 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 153  Q
    |||||||||||| |||||||||| ||| || ||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  14591928 aaaatgaatgaagggctaagatttattcagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggaggaaatt 14591840  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 153
Target Start/End: Original strand, 30917461 - 30917554
Alignment:
Q  60 acattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 153  Q
    ||||||||||||||||| || |||||||||||||| ||| |||||||| |||||| ||||| |||||||||||| |||| || ||||| |||||    
T  30917461 acattaaaatgaatgaagggttaagattaattaagatgtcattaaaagaaatggacggctaagattatttcactcgagaaaataggagaaaatt 30917554  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 19828717 - 19828629
Alignment:
Q  65 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 153  Q
    |||||||||||| |||||| |||| ||||| ||||||||||| | ||||| ||||| ||||||||||| ||||| |||| |||||||||    
T  19828717 aaaatgaatgaagggctaaaattagttaagatgttattaaaatggatggacggctaagattatttcacaggagaaaacatgaggaaatt 19828629  T

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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 25871243 - 25871128
Alignment:
Q  23 aagccagaacgtgaaaagagagagaaatgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctagg 122  Q
    |||||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||| || || |    
T  25871243 aagccagaacgtgaaaagggagaaaaatgaaaatgacacattgaaatgaatgaaaggctgagattagttaaggtgtcattaaaaggaatggacggttaag 25871144  T
Q  123 attatttcactggaga 138  Q
    |||||||||| |||||    
T  25871143 attatttcacaggaga 25871128  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 16748975 - 16748843
Alignment:
Q  5 gtttctattattttcaataagccagaacgtgaaaagagagagaaatgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaa 104  Q
    ||||||||||||| | | |||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||| || |||||| ||||||||| |||||    
T  16748975 gtttctattattt-ctacaagccagaacgtgaaaagggagaaaaatgaaaatgacacattgaaatgaatgaaagactgagattagttaaggtgtcattaa 16748877  T
Q  105 aaggaatggatggctaggattatttcactggaga 138  Q
    || ||||||| | ||| ||||||||||| |||||    
T  16748876 aaagaatggacgactaagattatttcacaggaga 16748843  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 25506368 - 25506234
Alignment:
Q  23 aagccagaacgtgaaaagaga----gagaaatgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggc 118  Q
    |||||||||||||||||| ||    | |||||||||| |||||||||||||||||||| |||| |||||||||||||| | |||||||| |||||| |||    
T  25506368 aagccagaacgtgaaaagggaaggagggaaatgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggc 25506269  T
Q  119 taggattatttcactggagataacaggaggaaatt 153  Q
    || ||||  ||||| ||||| ||| ||||||||||    
T  25506268 taagattgattcacaggagaaaactggaggaaatt 25506234  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 31121131 - 31121265
Alignment:
Q  23 aagccagaacgtgaaaagagaga----gaaatgaaaacgacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggc 118  Q
    |||||||||||||||||| |||     |||||||||| |||||||||||||||||||| |||| |||||||||||||| | |||||||| |||||| |||    
T  31121131 aagccagaacgtgaaaagggaggaagggaaatgaaaatgacacattaaaatgaatgaagggctgagattaattaaggtttcattaaaagaaatggacggc 31121230  T
Q  119 taggattatttcactggagataacaggaggaaatt 153  Q
    || ||||  ||||| ||||| ||| ||||||||||    
T  31121231 taagattgattcacaggagaaaactggaggaaatt 31121265  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 40396829 - 40396917
Alignment:
Q  65 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggagataacaggaggaaatt 153  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||    
T  40396829 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctaagattatttcacaggagaaaacaggagaaaatt 40396917  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 50232689 - 50232747
Alignment:
Q  78 ggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggag 137  Q
    ||||||||||||||||| ||| ||||||| |||||||||| || ||||||||||| ||||    
T  50232689 ggctaagattaattaagatgtcattaaaa-gaatggatggttaagattatttcacaggag 50232747  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 50052870 - 50052797
Alignment:
Q  65 aaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggaga 138  Q
    |||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||||    
T  50052870 aaaatgaatgaaggactaagattaattaagatgtcattaaaaggaatggatggctgagattatttcacaggaga 50052797  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 13007964 - 13008044
Alignment:
Q  57 gacacattaaaatgaatgaaaggctaagattaattaaggtgttattaaaaggaatggatggctaggattatttcactggag 137  Q
    ||||| |||||||||||||| ||||||||| | ||||||||| |||||||||||||||  || |  |||||||||||||||    
T  13007964 gacacgttaaaatgaatgaagggctaagatcagttaaggtgtcattaaaaggaatggacagccaaaattatttcactggag 13008044  T

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